Rv0668 - c.2593T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
5 RR-TB
24 HR-TB
18 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 8 |
| lineage4.9 | 73 |
| lineage2.2.1 | 8 |
| lineage4.1.1.3 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4 | 1 |
| lineage4.4.1.1.1 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.8 | 3 |
| La1.7;lineage4.9 | 6 |
| lineage3 | 4 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.7 | 1 |
| 3 | |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.8.1 | 2 |
| lineage4.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1.8.1 | 2 |
| La1.7 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR736831 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR4798823 | HR-TB | None | ERR502511 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR751326 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1159378 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR8692887 | Other | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675246 | Other | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4798099 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None |
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