EBG00000313325 - n.843dupT
Drug resistance types
5 Sensitive
20 RR-TB
22 HR-TB
12 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
202 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 34 |
| lineage4.4.1.1 | 4 |
| lineage4.2.2.2 | 5 |
| lineage4.4.1.1.1 | 3 |
| lineage2.2.1 | 18 |
| lineage1.2.1.2 | 2 |
| lineage1.2.1.2.1 | 5 |
| lineage4.1.1.3 | 5 |
| lineage3.1.3 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.8 | 26 |
| lineage4.3.4.2.1 | 4 |
| lineage4.4.2 | 1 |
| lineage1.1.2 | 13 |
| lineage3.1.2 | 3 |
| lineage4.9 | 7 |
| lineage4.1.2.1 | 40 |
| lineage4.1.2 | 2 |
| lineage4.1.3 | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.2.2 | 8 |
| lineage4.1 | 3 |
| lineage4.5 | 4 |
| lineage4.7 | 6 |
| lineage4.2.1 | 5 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.3.1 | 7 |
| lineage2.2 | 1 |
| lineage4.2 | 2 |
| lineage4.8;lineage4.2.1.1 | 1 |
| lineage4.6.3 | 1 |
| 6 | |
| lineage3.1 | 2 |
| lineage4.3.3 | 7 |
| lineage4.8.1 | 1 |
| lineage4.6 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4 | 3 |
| lineage4.3.2 | 3 |
| lineage4.2.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4;lineage3.1.2.1 | 1 |
| lineage4.2.1.1 | 2 |
| La1.8.1 | 1 |
| lineage4.8.2 | 4 |
| La3 | 1 |
| lineage1.1.1 | 2 |
| lineage4.4 | 2 |
| lineage4.3.1.1 | 2 |
| lineage6 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 267 |
Geographic prevalence
Country level data for this variant is available for 84 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11342657 | HR-TB | lineage3 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349154 | MDR-TB | lineage4.4.1.1.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370233 | Other | lineage1.2.1.2 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR11349184 | MDR-TB | lineage2.2.1 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR19304114 | Other | lineage1.2.1.2.1 | None | SRR19224247 | Other | lineage1.2.1.2 | None | ERR4815319 | Other | lineage4.1.1.3 | gb | SRR21686114 | Other | lineage3.1.3 | None | ERR4815172 | Other | lineage1.2.2.2 | None | ERR4815178 | Other | lineage4.8 | gb | ERR4815298 | Other | lineage4.3.4.2.1 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815255 | Other | lineage4.4.2 | None | ERR4815795 | Other | lineage1.1.2 | None | ERR4815306 | Other | lineage1.2.1.2.1 | gb | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814362 | Other | lineage4.8 | None | ERR4815771 | Other | lineage1.2.2.2 | gb | ERR4814438 | HR-TB | lineage4.1.2.1 | gb | ERR4814496 | RR-TB | lineage4.1.2 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4815680 | Other | lineage1.1.2 | gb | ERR4815684 | Other | lineage5.1.4 | gb | ERR4814551 | Other | lineage4.1.2.1 | gb | ERR4814497 | HR-TB | lineage4.6.2.2 | None | ERR4815413 | Other | lineage4.3.4.2.1 | None | ERR4815419 | Other | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | ERR4815425 | Other | lineage4.5 | gb | ERR4814748 | Other | lineage4.8 | None | ERR4815476 | HR-TB | lineage2.2.1 | gb | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4815467 | Other | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4814761 | Other | lineage4.8 | gb | ERR4814783 | Other | lineage4.7 | None | ERR4814790 | Other | lineage4.2.1 | None | ERR4816968 | Other | lineage4.2.1 | gb | SRR3675252 | RR-TB | lineage1.1.2 | None | ERR4814841 | Other | lineage4.1 | None | ERR3276005 | Other | lineage4.1.2.1 | nl | SRR3675287 | Other | lineage3 | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR4815039 | Other | lineage4.1.1.3.1 | gb | ERR4815080 | Other | lineage4.1.2.1 | None | ERR4815917 | Other | lineage2.2.1 | gb | SRR3675361 | Other | lineage1.1.2 | gb | ERR4816944 | RR-TB | lineage2.2 | None | ERR4816969 | Other | lineage4.8 | None | ERR4817508 | Other | lineage4.1.2.1 | gb | ERR4816043 | Other | lineage4.2 | None | ERR4816993 | Other | lineage4.3.4.2.1 | None | ERR2027248 | Other | lineage2.2.1 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027292 | HR-TB | lineage3 | None | ERR4817478 | Other | lineage3 | None | ERR4816191 | Other | lineage3.1.2 | gb | ERR4816397 | Other | lineage1.1.2 | None | ERR4816283 | Other | lineage4.1.2.1 | None | ERR4816353 | Other | lineage2.2.1 | gb | ERR4816314 | Other | lineage1.2.1.2.1 | gb | ERR4817368 | Other | lineage4.6.3 | None | ERR4816429 | Other | lineage1.1.2 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816604 | RR-TB | lineage4.1.2 | None | ERR4817492 | HR-TB | lineage3.1 | gb | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816713 | Other | lineage1.1.2 | gb | ERR4816690 | Other | None | ERR4817206 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4817853 | Other | lineage4.8.1 | None | ERR4816757 | Other | lineage2.2.1 | gb | ERR4816882 | Other | lineage4.8 | None | ERR4815814 | Other | lineage3 | gb | ERR2513378 | Other | lineage3 | None | ERR4817803 | Other | lineage4.2.2.2 | None | ERR4817822 | Other | lineage4.6 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4817278 | Other | lineage4.8 | gb | ERR4818671 | Other | lineage4.8 | gb | ERR4817795 | Other | lineage4.7 | gb | ERR4817799 | Other | lineage3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR2513398 | Other | lineage4.2.1 | gb | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR4818724 | Other | lineage4.1.2.1 | gb | ERR2513401 | HR-TB | lineage3 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4817987 | Other | lineage4.7 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4818003 | Other | lineage1.2.1.2.1 | gb | ERR4818065 | Other | lineage4.1.2.1 | None | ERR4818249 | Other | lineage4.1.2.1 | gb | ERR2512599 | Other | lineage3 | gb | ERR4818261 | Other | lineage1.1.2 | None | ERR4818265 | Other | lineage4.1.2.1 | None | ERR4818274 | Other | lineage4 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4818407 | Other | lineage4.3.2 | None | ERR2513467 | Other | lineage1.1.2 | None | ERR2512716 | HR-TB | lineage4.6.2.2 | gb | ERR2509885 | RR-TB | lineage3 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818556 | Other | lineage3 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4818580 | Other | lineage4.7 | None | ERR2513296 | Other | lineage4.1.2.1 | gb | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007171 | Other | lineage2.2.1 | None | ERR2512849 | RR-TB | lineage1.1.3.1 | None | ERR4819332 | Other | lineage3 | gb | SRR5007180 | Other | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4817602 | Sensitive | lineage4.1.2.1 | None | ERR4817645 | Other | lineage4.8 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4819181 | Other | lineage3 | gb | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4820714 | Other | lineage3 | gb | ERR2513808 | Other | lineage4.1.2.1 | gb | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4820270 | MDR-TB | lineage4.8 | gb | ERR2513841 | Sensitive | lineage4.1.1.3.1 | gb | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR2513912 | Other | lineage4.5 | gb | ERR4820297 | Other | lineage4.2.1 | None | ERR4818977 | RR-TB | lineage4.1.2.1 | None | ERR4819131 | Other | lineage4 | None | ERR4819228 | Sensitive | lineage4.1.1.2 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4819377 | Other | lineage4;lineage3.1.2.1 | None | ERR2514173 | Other | lineage4.5 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820364 | HR-TB | lineage4.2.1.1 | gb | ERR2514261 | Other | lineage3 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR4820408 | Other | lineage4.1.2.1 | None | ERR4819630 | Other | lineage4.8 | gb | ERR4820424 | Other | La1.8.1 | gb | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR2514479 | Other | lineage4.8.2 | gb | ERR2514515 | Other | lineage4.2.1 | None | ERR4819730 | Other | lineage4.8 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4821154 | Other | lineage2.2.1 | gb | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | ERR4819830 | Other | lineage2.2.1 | None | ERR4820543 | Other | La3 | None | ERR4820558 | Other | lineage4.8 | gb | ERR2514896 | Other | lineage3 | gb | ERR2514968 | Other | lineage4.3.3 | None | ERR4820001 | Other | lineage4.8 | gb | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820652 | Other | lineage1.1.1 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820679 | Other | lineage4.8 | None | ERR4820907 | Other | lineage4.1.2.1 | gb | ERR4820926 | Other | lineage4.8 | gb | ERR4821791 | HR-TB | lineage4.1.2.1 | None | ERR4820575 | Other | lineage3 | gb | ERR2514962 | Other | lineage4.4 | None | ERR4820880 | Other | lineage4.2.2.2 | gb | ERR4820614 | Other | lineage3.1.2 | None | ERR4820049 | Other | lineage4.8 | gb | ERR4820059 | Other | lineage3 | None | ERR4820122 | Other | lineage4.3.1.1 | None | ERR4820666 | Other | lineage4.8 | gb | ERR4820187 | Other | lineage4.3.3 | None | ERR4820941 | HR-TB | lineage3 | gb | ERR4821011 | Other | lineage6 | None | ERR4821020 | Other | lineage4.1.1.3.1 | None | SRR6046089 | Other | lineage4.1.2.1 | None | ERR4821054 | Other | lineage3 | None | ERR4821853 | Other | lineage4.3.3 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4821924 | HR-TB | lineage4.6.2.2 | gb | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821214 | RR-TB | None | ERR4821932 | Other | lineage2.2.1 | None | ERR4821940 | Other | lineage4.9 | None | ERR4821953 | Other | lineage4.7 | gb | ERR4822035 | Other | lineage4.8 | None | ERR4821325 | Other | lineage3 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821719 | Other | lineage3 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822105 | Other | lineage4.1 | None | ERR4821449 | Other | lineage1.2.2.1 | gb | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4821595 | Other | lineage4.1.1.3 | None | SRR6045705 | Other | lineage4.9 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR6045847 | Other | lineage4.3.3 | gb | SRR6044784 | MDR-TB | lineage3 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4821477 | Other | lineage4.8 | None | ERR4821492 | HR-TB | lineage3 | None | ERR4822154 | Other | lineage4.1.2.1 | None | ERR4821556 | HR-TB | lineage4.6.2.2 | gb | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045726 | Other | lineage3 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR6045920 | Other | lineage4.1.1 | gb | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6045910 | Other | lineage3.1 | None | SRR6045925 | Other | lineage4.2 | None | SRR6044936 | Other | lineage4 | None | SRR6044993 | Other | lineage3 | None | SRR6044957 | Other | lineage4.8.2 | None | SRR6046020 | Other | lineage3 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6045308 | Other | lineage3.1.2.2 | None | SRR6045288 | Other | lineage3 | gb | SRR6045232 | Other | lineage4.1.1.3 | gb | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046223 | Sensitive | lineage3 | gb | SRR6046534 | Other | lineage1.1.2 | None | SRR6046460 | HR-TB | None | SRR6046528 | Other | lineage3.1.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046636 | Other | lineage4.3.1.1 | gb | SRR6046729 | Other | None | SRR6046679 | Other | lineage3 | gb | SRR6046739 | Other | lineage1.1.2 | None | SRR6046779 | Other | lineage4.1.2.1 | gb | ERR9117823 | Other | lineage1.1.1 | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6153150 | Other | lineage3.1.1 | None | ERR3148546 | Other | lineage4.3.2 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR9117706 | Other | lineage4.4 | None | ERR9117792 | Other | lineage1.1.2 | None | SRR6153166 | Other | lineage1.2.1.2.1 | ca | SRR6398097 | Other | lineage4.2.1.1 | ca | SRR7131122 | Other | lineage2.2.1 | None | SRR9971201 | MDR-TB | lineage4.4.1.1.1 | None | ERR036207 | Other | lineage4.9 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117837 | Other | lineage4.8.2 | None | SRR10315640 | MDR-TB | lineage4.8 | None | SRR10315705 | MDR-TB | lineage4.4.1.1.1 | None |
|---|
