TB-Profiler result

Run: ERR4814841
Summary

Run ID: ERR4814841

Sample name:

Date: 01-04-2023 13:31:18

Number of reads: 300936

Percentage reads mapped: 72.11

Strain: lineage4.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.57 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8694 c.1393C>T synonymous_variant 1.0
gyrA 9024 p.Arg575Trp missense_variant 0.2
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491162 p.Glu127Val missense_variant 0.29
rpoB 761030 c.1224G>C synonymous_variant 0.29
rpoB 761037 c.1231T>C synonymous_variant 0.25
rpoB 761051 c.1245G>C synonymous_variant 0.25
rpoB 761054 c.1248G>C synonymous_variant 0.25
rpoB 761057 c.1251G>C synonymous_variant 0.25
rpoB 761060 c.1254C>G synonymous_variant 0.25
rpoB 761084 c.1278C>A synonymous_variant 0.22
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.2
rpoB 761096 c.1290G>C synonymous_variant 0.2
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.2
rpoB 761102 c.1296A>G synonymous_variant 0.2
rpoB 761150 c.1344A>T synonymous_variant 0.2
rpoB 761159 c.1353G>C synonymous_variant 0.18
rpoB 761165 c.1359G>C synonymous_variant 0.18
rpoB 762053 c.2247T>C synonymous_variant 0.25
rpoB 762057 p.Ile751Val missense_variant 0.25
rpoB 762062 c.2256T>C synonymous_variant 0.29
rpoB 762065 c.2259T>C synonymous_variant 0.29
rpoB 762083 c.2277T>C synonymous_variant 0.2
rpoB 762110 c.2304G>C synonymous_variant 0.18
rpoB 762114 p.Ile770Val missense_variant 0.2
rpoC 763642 c.273G>C synonymous_variant 0.25
rpoC 763648 c.279C>T synonymous_variant 0.29
rpoC 763657 p.Glu96Asp missense_variant 0.29
rpoC 763660 c.291T>C synonymous_variant 0.21
rpoC 763666 c.297G>C synonymous_variant 0.31
rpoC 763675 c.306C>G synonymous_variant 0.23
rpoC 763699 c.330G>T synonymous_variant 0.33
rpoC 763708 c.339G>C synonymous_variant 0.27
rpoC 763714 c.345G>C synonymous_variant 0.27
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763718 p.Leu117Val missense_variant 0.25
rpoC 763723 c.354G>C synonymous_variant 0.27
rpoC 763724 p.Asp119Asn missense_variant 0.27
rpoC 763729 c.360G>C synonymous_variant 0.3
rpoC 763732 c.363C>G synonymous_variant 0.33
rpoC 763735 c.366G>C synonymous_variant 0.3
rpoC 763744 c.375G>C synonymous_variant 0.33
rpoC 763751 p.Ile128Val missense_variant 0.33
rpoC 763772 p.Val135Met missense_variant 0.33
rpoC 764485 c.1116G>C synonymous_variant 0.17
rpoC 764491 c.1122G>T synonymous_variant 0.15
rpoC 764497 c.1128A>G synonymous_variant 0.21
rpoC 764503 c.1134G>T synonymous_variant 0.2
rpoC 764509 c.1140G>C synonymous_variant 0.2
rpoC 764512 c.1143G>C synonymous_variant 0.2
rpoC 764521 c.1152T>C synonymous_variant 0.19
rpoC 764536 c.1167G>C synonymous_variant 0.2
rpoC 764542 c.1173C>T synonymous_variant 0.14
rpoC 764543 p.Thr392Ala missense_variant 0.15
rpoC 764548 c.1179G>C synonymous_variant 0.14
rpoC 764566 c.1197C>G synonymous_variant 0.12
rpoC 764573 p.Leu402Ile missense_variant 0.12
rpoC 764578 c.1209C>G synonymous_variant 0.12
rpoC 764581 c.1212T>C synonymous_variant 0.12
rpoC 764582 p.Leu405Met missense_variant 0.12
rpoC 764593 c.1224C>T synonymous_variant 0.25
rpoC 764602 c.1233C>T synonymous_variant 0.22
rpoC 764605 c.1236G>T synonymous_variant 0.33
rpoC 764611 c.1242G>T synonymous_variant 0.29
rpoC 764623 c.1254C>G synonymous_variant 0.14
rpoC 764626 c.1257C>T synonymous_variant 0.27
rpoC 764632 c.1263T>C synonymous_variant 0.18
rpoC 764635 c.1266C>G synonymous_variant 0.11
rpoC 764644 c.1275G>T synonymous_variant 0.11
rpoC 764647 c.1278C>T synonymous_variant 0.11
rpoC 764650 c.1281G>T synonymous_variant 0.18
rpoC 764656 c.1287C>A synonymous_variant 0.13
rpoC 764662 c.1293G>C synonymous_variant 0.24
rpoC 764664 p.Val432Gly missense_variant 0.12
rpoC 764671 c.1302G>C synonymous_variant 0.11
rpoC 764677 c.1308C>G synonymous_variant 0.11
rpoC 764678 p.Lys437Gln missense_variant 0.12
rpoC 764692 c.1323C>T synonymous_variant 0.11
rpoC 764703 p.Lys445Ser missense_variant 0.12
rpoC 764706 p.Leu446Gln missense_variant 0.25
rpoC 764713 c.1344G>C synonymous_variant 0.23
rpoC 764731 c.1362G>C synonymous_variant 0.25
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765575 p.Val736Met missense_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776198 c.2283C>T synonymous_variant 0.17
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 0.22
rpsL 781868 c.309T>C synonymous_variant 0.22
rpsL 781871 c.312G>C synonymous_variant 0.22
rpsL 781877 c.318T>C synonymous_variant 0.22
rpsL 781892 c.333A>G synonymous_variant 0.25
rpsL 781898 c.339A>T synonymous_variant 0.25
rpsL 781916 c.357T>C synonymous_variant 0.2
rplC 800758 c.-51A>C upstream_gene_variant 0.17
embR 1416232 p.Cys372Gly missense_variant 0.14
embR 1416259 c.1089G>C synonymous_variant 0.14
embR 1416262 c.1086G>C synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.67
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.75
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.89
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.91
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.91
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.91
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.18
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 1.0
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.82
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.56
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.8
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.8
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.67
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.5
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.5
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.62
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.69
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.69
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.68
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.71
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.73
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.73
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.77
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.74
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.68
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.12
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.81
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.17
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.68
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.68
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.16
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.18
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.91
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.78
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.64
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.28
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.64
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 0.82
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.82
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.27
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.61
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.15
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.62
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.3
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.59
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.57
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.57
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.42
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.29
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.5
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.2
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.33
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.2
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.86
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.47
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.4
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.78
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.8
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.33
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.19
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.38
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.12
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.94
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.47
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.39
rrs 1473034 n.1189A>G non_coding_transcript_exon_variant 0.13
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.93
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.73
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.73
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.75
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.37
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.42
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.68
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.59
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.65
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.12
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.44
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.65
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.71
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.72
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.11
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.7
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.58
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.45
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.65
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.11
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.12
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.72
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.65
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.75
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.62
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.67
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.68
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.11
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.73
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.69
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.67
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.67
rrl 1473384 n.-274A>G upstream_gene_variant 0.25
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.67
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.67
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.67
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.67
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.67
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.75
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.4
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.4
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.4
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.5
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.75
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.8
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.8
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.75
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.75
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.67
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.8
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.8
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.83
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.92
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.92
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.92
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.88
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.58
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.91
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.67
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.67
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.75
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 0.4
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.83
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.5
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.4
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.36
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.36
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.55
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.55
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.4
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.5
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.33
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.33
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.5
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.43
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.29
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.4
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.25
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.25
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.38
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.38
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.38
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.2
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.3
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.2
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.2
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.2
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.62
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.25
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.25
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.25
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.38
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.25
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.33
rrl 1476295 n.2638C>A non_coding_transcript_exon_variant 0.33
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.33
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.33
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 0.33
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.33
rrl 1476311 n.2654G>T non_coding_transcript_exon_variant 0.33
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.33
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.7
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.12
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.12
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.71
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.12
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.11
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.12
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.62
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.62
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.88
rrl 1476467 n.2810A>G non_coding_transcript_exon_variant 0.12
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.64
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.75
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.83
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.75
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.5
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.67
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.75
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.5
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.75
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.75
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.75
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.67
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.67
rpsA 1833628 c.87G>C synonymous_variant 0.5
rpsA 1833661 c.120A>G synonymous_variant 0.75
rpsA 1833667 c.126C>T synonymous_variant 0.6
rpsA 1833668 p.Ile43Val missense_variant 0.6
rpsA 1833676 c.135A>G synonymous_variant 0.6
rpsA 1833679 c.138G>C synonymous_variant 0.6
rpsA 1833684 p.Arg48His missense_variant 0.33
rpsA 1833694 c.153G>C synonymous_variant 0.5
rpsA 1833700 c.159C>T synonymous_variant 0.29
rpsA 1833721 c.180A>G synonymous_variant 0.18
rpsA 1833727 c.186G>C synonymous_variant 0.27
rpsA 1833732 p.Pro64Leu missense_variant 0.27
rpsA 1833734 p.Ala65Ser missense_variant 0.18
rpsA 1833742 c.201A>G synonymous_variant 0.25
rpsA 1833764 p.Asp75Asn missense_variant 0.15
rpsA 1833770 p.Asn77Asp missense_variant 0.21
rpsA 1833775 p.Glu78Asp missense_variant 0.14
rpsA 1833979 c.438T>C synonymous_variant 0.15
rpsA 1833994 c.453G>C synonymous_variant 0.18
rpsA 1834009 c.468C>T synonymous_variant 0.22
rpsA 1834012 c.471G>C synonymous_variant 0.22
rpsA 1834040 p.Lys167Arg missense_variant 0.25
rpsA 1834093 c.552G>C synonymous_variant 0.17
rpsA 1834294 c.753G>C synonymous_variant 0.22
rpsA 1834298 p.Gln253Glu missense_variant 0.22
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 0.22
rpsA 1834361 c.820T>C synonymous_variant 0.22
rpsA 1834366 c.825A>G synonymous_variant 0.25
rpsA 1834378 c.837T>C synonymous_variant 0.22
rpsA 1834387 c.846C>T synonymous_variant 0.22
rpsA 1834395 p.Arg285Gln missense_variant 0.25
rpsA 1834398 p.His286Pro missense_variant 0.22
rpsA 1834411 c.870T>C synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102401 c.642T>C synonymous_variant 0.67
PPE35 2170229 c.384A>G synonymous_variant 0.5
PPE35 2170232 c.381T>A synonymous_variant 0.5
PPE35 2170238 c.375T>G synonymous_variant 0.5
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475346 p.Leu447Arg missense_variant 1.0
Rv3236c 3612515 p.Arg201His missense_variant 1.0
clpC1 4038465 p.Met747Thr missense_variant 0.25
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4249408 c.2895G>A synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408031 p.Leu58Phe missense_variant 1.0