Rv3596c - c.615T>C
Drug resistance types
23 Sensitive
26 RR-TB
29 HR-TB
24 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1;lineage9 | 1 |
| lineage4.9 | 22 |
| La3;M.canetti | 11 |
| lineage2.2.1 | 7 |
| lineage3 | 2 |
| M.canetti | 67 |
| La1.7;lineage4.9 | 5 |
| lineage4.1.1.1 | 1 |
| lineage2.2;lineage4 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.4.1.1 | 1 |
| lineage4.8 | 11 |
| La1.2;La1.8.1 | 1 |
| lineage4.3.4.2.1 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| 1 | |
| lineage4.3.4.2 | 1 |
| lineage2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.4.2 | 1 |
| lineage3.1.2.1 | 1 |
| La2;M.canetti | 1 |
| La1.8.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.3 | 3 |
| lineage4.3.4.1 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.8.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage1.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 197 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR9786076 | Other | lineage3 | None | ERR266109 | Other | M.canetti | None | ERR266107 | Other | M.canetti | None | ERR3597001 | Other | M.canetti | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR3597005 | Other | M.canetti | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR266110 | Other | M.canetti | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR551055 | Other | M.canetti | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR552307 | Other | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | SRR5818652 | Other | M.canetti | dj | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR313116 | Other | M.canetti | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR24061599 | Other | M.canetti | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR313115 | Other | M.canetti | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR313117 | Other | M.canetti | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR3597007 | Other | M.canetti | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5818653 | Other | M.canetti | dj | ERR551182 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR978766 | RR-TB | lineage4.8 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4830353 | HR-TB | La1.7 | None | SRR24061598 | Other | M.canetti | None | ERR266122 | Other | La3;M.canetti | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR10177258 | Other | M.canetti | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5818676 | Other | M.canetti | dj | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR10177260 | Other | M.canetti | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4796577 | HR-TB | None | ERR266125 | Other | La3;M.canetti | None | ERR266106 | Other | M.canetti | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR3597003 | Other | M.canetti | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR5341330 | Other | lineage4.9 | None | SRR5818567 | Other | M.canetti | dj | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4815361 | Other | M.canetti | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR266126 | Other | La2;M.canetti | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR4819927 | Other | M.canetti | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR4821046 | Other | M.canetti | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR5818668 | Other | M.canetti | dj | SRR5818614 | Other | M.canetti | dj | SRR24061597 | Sensitive | M.canetti | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR266121 | Other | M.canetti | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR3597006 | Other | La3;M.canetti | None | SRR10177263 | Other | M.canetti | None | ERR3283032 | Other | lineage4.9 | None | ERR4816019 | Other | M.canetti | None | ERR552305 | Other | M.canetti | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4815079 | RR-TB | lineage3 | None | SRR10177262 | Other | M.canetti | None | ERR551180 | Sensitive | M.canetti | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1184308 | RR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR6650709 | Other | M.canetti | None | ERR7451301 | Other | M.canetti | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR5341456 | Other | lineage4.9 | None | SRR10177261 | Other | M.canetti | None | SRR22179528 | Other | M.canetti | None | SRR28170812 | Other | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | SRR18289196 | Other | M.canetti | None | ERR3597004 | Sensitive | M.canetti | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR24061600 | Other | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR16058668 | Other | M.canetti | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR552304 | Other | M.canetti | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1238559 | Other | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR10177259 | Other | M.canetti | None | SRR11342682 | Other | lineage4.1.2 | None | ERR313113 | Other | M.canetti | None | ERR4818536 | Other | lineage4.9 | None | ERR3597002 | Other | M.canetti | None | ERR4796457 | Sensitive | lineage1.1.2 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR266120 | Other | M.canetti | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR9125480 | Other | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR551057 | Other | M.canetti | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR4817181 | Other | M.canetti | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR313114 | Other | M.canetti | None | ERR978767 | RR-TB | lineage4.8 | None | ERR9125475 | Other | M.canetti | None | SRR5818685 | Other | M.canetti | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR551056 | Other | M.canetti | None | SRR3675222 | Other | La1.7 | None | ERR1043163 | Other | La3;M.canetti | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR266108 | Other | M.canetti | None | ERR266124 | Other | M.canetti | None | ERR1043164 | Other | La3;M.canetti | None | SRR5818605 | Other | M.canetti | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR7451300 | Sensitive | M.canetti | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None |
|---|
