Rv3596c - c.1635G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
59 Sensitive
2 RR-TB
16 HR-TB
5 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 13 |
| lineage4.9 | 66 |
| lineage4.4.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.3 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| 1 | |
| lineage3;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4 | 3 |
| lineage4.3 | 1 |
| lineage1.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.4.1.1 | 1 |
| lineage3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.5 | 2 |
| lineage4.2.1 | 1 |
| lineage5.1.4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 123 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR363445 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR3675270 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR29096659 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046046 | Other | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR6865502 | Sensitive | lineage4 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR2513259 | Other | lineage3 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR752229 | Other | lineage4.5 | None | SRR6046245 | Other | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR363502 | Other | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR400326 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR363509 | Sensitive | lineage4.9 | None |
|---|
