Run ID: SRR8692871
Sample name:
Date: 13-08-2023 22:41:11
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.99 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rplC | 801268 | p.Cys154Arg | missense_variant | 1.0 | linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6657 | p.Ser473* | stop_gained | 0.13 |
gyrA | 7811 | c.510C>T | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.12 |
mshA | 575664 | p.Gly106Val | missense_variant | 0.13 |
mshA | 576403 | c.1056C>A | synonymous_variant | 0.13 |
ccsA | 619965 | c.75G>T | synonymous_variant | 0.13 |
ccsA | 620287 | c.397C>A | synonymous_variant | 0.12 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.11 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.12 |
rpoB | 760457 | c.651C>T | synonymous_variant | 0.12 |
rpoB | 760535 | c.729C>G | synonymous_variant | 0.14 |
rpoB | 760541 | c.735G>C | synonymous_variant | 0.14 |
rpoB | 761188 | p.Arg461Leu | missense_variant | 0.22 |
rpoB | 761300 | c.1494G>C | synonymous_variant | 0.1 |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.14 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.15 |
rpoC | 764024 | c.655_657delTTGinsCTC | synonymous_variant | 0.18 |
rpoC | 764029 | p.Glu220Asp | missense_variant | 0.17 |
rpoC | 764032 | p.Asp221Glu | missense_variant | 0.17 |
rpoC | 764040 | p.Ser224Thr | missense_variant | 0.16 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.17 |
rpoC | 764059 | c.690G>T | synonymous_variant | 0.2 |
rpoC | 764071 | c.702G>C | synonymous_variant | 0.22 |
rpoC | 764077 | c.708C>G | synonymous_variant | 0.22 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.22 |
rpoC | 764084 | p.Asn239Val | missense_variant | 0.22 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.24 |
rpoC | 764134 | c.765C>A | synonymous_variant | 0.12 |
rpoC | 764227 | c.858G>T | synonymous_variant | 0.15 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.18 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.18 |
rpoC | 764719 | c.1350G>A | synonymous_variant | 0.19 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.12 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.13 |
rpoC | 765004 | c.1635G>T | synonymous_variant | 0.16 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.16 |
rpoC | 765008 | c.1639T>C | synonymous_variant | 0.17 |
rpoC | 765011 | c.1642_1643delAGinsTC | synonymous_variant | 0.16 |
rpoC | 765016 | c.1647C>G | synonymous_variant | 0.17 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.17 |
rpoC | 765034 | c.1665T>C | synonymous_variant | 0.15 |
rpoC | 765040 | c.1671T>C | synonymous_variant | 0.12 |
rpoC | 765041 | c.1672T>C | synonymous_variant | 0.12 |
rpoC | 765047 | c.1678T>C | synonymous_variant | 0.11 |
rpoC | 765052 | c.1683C>G | synonymous_variant | 0.11 |
rpoC | 765054 | p.Ser562Cys | missense_variant | 0.12 |
rpoC | 767164 | p.Asn1265Lys | missense_variant | 0.12 |
mmpL5 | 775649 | c.2832G>A | synonymous_variant | 0.13 |
mmpL5 | 775790 | c.2691C>A | synonymous_variant | 0.12 |
mmpL5 | 777836 | c.645C>A | synonymous_variant | 0.2 |
mmpS5 | 778565 | p.Cys114Phe | missense_variant | 0.12 |
mmpS5 | 779544 | c.-639G>T | upstream_gene_variant | 0.12 |
rplC | 801250 | p.Pro148Ser | missense_variant | 0.13 |
fbiC | 1303785 | c.855G>A | synonymous_variant | 0.13 |
fbiC | 1303944 | c.1014G>A | synonymous_variant | 0.14 |
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 |
Rv1258c | 1406841 | p.Thr167Met | missense_variant | 0.12 |
Rv1258c | 1407322 | p.Gly7Cys | missense_variant | 0.13 |
atpE | 1461203 | p.Phe53Leu | missense_variant | 0.12 |
atpE | 1461216 | p.Gly58Cys | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472030 | n.185G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472355 | n.510C>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472850 | n.1005T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473292 | n.1447G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473404 | n.-254C>A | upstream_gene_variant | 0.15 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473811 | n.154C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474047 | n.390G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475449 | n.1792C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475759 | n.2102C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475775 | n.2118G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476129 | n.2472G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476583 | n.2926G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476699 | n.3042A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476738 | n.3081C>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673173 | c.-267G>T | upstream_gene_variant | 0.12 |
rpsA | 1833436 | c.-106C>A | upstream_gene_variant | 0.12 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.1 |
rpsA | 1834838 | p.Glu433Gln | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.14 |
tlyA | 1918046 | p.Gly36Val | missense_variant | 0.12 |
tlyA | 1918056 | c.117G>T | synonymous_variant | 0.14 |
ndh | 2102759 | p.Ala95Asp | missense_variant | 0.12 |
katG | 2155800 | c.312G>A | synonymous_variant | 0.13 |
PPE35 | 2168938 | p.Ser559Gly | missense_variant | 0.11 |
PPE35 | 2169253 | p.Ala454Thr | missense_variant | 0.12 |
Rv1979c | 2222715 | c.450C>A | synonymous_variant | 0.17 |
kasA | 2518853 | p.Leu247Ile | missense_variant | 0.13 |
eis | 2714253 | p.Tyr360* | stop_gained | 0.22 |
eis | 2715273 | c.60C>T | synonymous_variant | 0.15 |
eis | 2715406 | c.-74G>T | upstream_gene_variant | 0.2 |
pepQ | 2860214 | p.Pro69Ser | missense_variant | 0.12 |
Rv2752c | 3066143 | p.Arg17Trp | missense_variant | 0.12 |
Rv2752c | 3067014 | c.-823G>C | upstream_gene_variant | 0.12 |
thyX | 3067237 | p.Asp237Tyr | missense_variant | 0.17 |
thyA | 3073907 | p.Ala189Pro | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.13 |
Rv3083 | 3449072 | p.Val190Ala | missense_variant | 0.11 |
Rv3083 | 3449521 | p.Asp340Asn | missense_variant | 0.14 |
Rv3083 | 3449541 | c.1038C>A | synonymous_variant | 0.18 |
whiB7 | 3568710 | c.-31C>A | upstream_gene_variant | 0.12 |
Rv3236c | 3611962 | p.Asn385Lys | missense_variant | 0.12 |
Rv3236c | 3612273 | p.Val282Phe | missense_variant | 0.18 |
fbiB | 3640632 | c.-903C>A | upstream_gene_variant | 0.14 |
fbiB | 3640833 | c.-702G>T | upstream_gene_variant | 0.2 |
fbiA | 3641262 | p.Ile240Met | missense_variant | 0.13 |
fbiB | 3642172 | p.Pro213Gln | missense_variant | 0.18 |
fbiB | 3642238 | p.Pro235Gln | missense_variant | 0.12 |
alr | 3840839 | p.Met194Ile | missense_variant | 0.12 |
alr | 3841043 | c.378C>A | synonymous_variant | 0.12 |
alr | 3841046 | c.375G>T | synonymous_variant | 0.12 |
alr | 3841346 | p.Met25Ile | missense_variant | 0.2 |
clpC1 | 4038632 | p.Glu691Asp | missense_variant | 0.12 |
clpC1 | 4039429 | p.Glu426Gln | missense_variant | 0.1 |
clpC1 | 4039610 | c.1095G>T | synonymous_variant | 0.13 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.12 |
clpC1 | 4039619 | c.1086G>A | synonymous_variant | 0.12 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.12 |
clpC1 | 4039640 | c.1065C>G | synonymous_variant | 0.11 |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.11 |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 0.1 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.11 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.11 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.11 |
clpC1 | 4039718 | c.987C>G | synonymous_variant | 0.12 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.12 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.11 |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.2 |
clpC1 | 4040315 | c.390G>A | synonymous_variant | 0.14 |
clpC1 | 4040318 | c.387C>G | synonymous_variant | 0.14 |
clpC1 | 4040321 | c.384C>G | synonymous_variant | 0.13 |
clpC1 | 4040324 | c.381G>C | synonymous_variant | 0.13 |
clpC1 | 4040330 | c.375C>G | synonymous_variant | 0.13 |
clpC1 | 4040345 | c.360C>G | synonymous_variant | 0.12 |
clpC1 | 4040348 | c.357G>C | synonymous_variant | 0.12 |
clpC1 | 4040354 | c.351A>G | synonymous_variant | 0.12 |
clpC1 | 4040357 | c.348T>C | synonymous_variant | 0.12 |
clpC1 | 4040618 | c.87C>A | synonymous_variant | 0.12 |
clpC1 | 4040698 | p.Glu3Lys | missense_variant | 0.12 |
panD | 4044368 | c.-87C>A | upstream_gene_variant | 0.18 |
embC | 4240134 | p.Ala91Val | missense_variant | 0.12 |
embC | 4240208 | p.Ala116Ser | missense_variant | 0.13 |
embC | 4241132 | p.Pro424Thr | missense_variant | 0.12 |
embC | 4241452 | c.1590G>A | synonymous_variant | 0.13 |
embA | 4242523 | c.-710G>T | upstream_gene_variant | 0.25 |
embC | 4243140 | p.Arg1093His | missense_variant | 0.14 |
embA | 4243442 | c.210G>T | synonymous_variant | 0.18 |
embA | 4244306 | c.1074G>T | synonymous_variant | 0.13 |
embA | 4244555 | p.Gln441His | missense_variant | 0.12 |
embA | 4244580 | p.Asp450Tyr | missense_variant | 0.13 |
embB | 4246918 | c.405G>T | synonymous_variant | 0.18 |
embB | 4247902 | c.1389G>A | synonymous_variant | 0.25 |
embB | 4249111 | c.2598T>C | synonymous_variant | 0.12 |
aftB | 4267908 | p.Ala310Asp | missense_variant | 0.12 |
whiB6 | 4338400 | p.Trp41Leu | missense_variant | 0.12 |