TB-Profiler result

Run: SRR8692846

Summary

Run ID: SRR8692846

Sample name:

Date: 13-08-2023 21:13:48

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 0.97 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 9304 p.Gly668Asp missense_variant 0.14
Rv1258c 1406686 p.Val219Ile missense_variant 0.96
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473949 n.292C>A non_coding_transcript_exon_variant 0.12
rrl 1474931 n.1274G>T non_coding_transcript_exon_variant 0.11
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.12
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.12
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.12
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.11