TB-Profiler result

Run: SRR8692844
Summary

Run ID: SRR8692844

Sample name:

Date: 13-08-2023 22:28:14

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 0.99 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.18
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.18
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.18
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.18
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.17
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.13
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.14
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.14
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.15
rrl 1473828 n.171G>C non_coding_transcript_exon_variant 0.17
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.17
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.17
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.17
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.13
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.12
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.12
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.12
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.12
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.12
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.11
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.12
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.2
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.2
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.2