TB-Profiler result

Run: SRR8692842
Summary

Run ID: SRR8692842

Sample name:

Date: 13-08-2023 22:26:41

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 1.0 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 0.96
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472570 n.725G>T non_coding_transcript_exon_variant 0.14
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.16
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.13
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.13
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.13
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.13
rrs 1472669 n.824_825insTAGA non_coding_transcript_exon_variant 0.14
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 0.12
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.12
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 0.14
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.12
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.12
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.13
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.13
rrs 1472701 n.856T>A non_coding_transcript_exon_variant 0.12
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.1
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.12
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.11
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.11
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.12
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.12
rrl 1473848 n.191G>T non_coding_transcript_exon_variant 0.15
rrl 1474213 n.556G>T non_coding_transcript_exon_variant 0.15