Run ID: SRR8692781
Sample name:
Date: 13-08-2023 20:38:53
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rplC | 801268 | p.Cys154Arg | missense_variant | 0.99 | linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475338 | n.1681G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475991 | n.2334T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475995 | n.2338G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476034 | n.2377C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476035 | n.2378G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476062 | n.2405G>T | non_coding_transcript_exon_variant | 0.18 |