TB-Profiler result

Run: SRR8692783
Summary

Run ID: SRR8692783

Sample name:

Date: 13-08-2023 19:06:06

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 0.98 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 0.93
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.25
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.25
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.25
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.25
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.25
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.25
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.25
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.27
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.27
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.27
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.27
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.27
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.25
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.25
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.25
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.25
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.25
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.25
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.25
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.25
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.18
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.22
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.22
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.22
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.22
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.25
Rv2752c 3065721 c.471G>T synonymous_variant 0.14