TB-Profiler result

Run: SRR8692854
Summary

Run ID: SRR8692854

Sample name:

Date: 13-08-2023 19:30:00

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rplC 801268 p.Cys154Arg missense_variant 1.0 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.15
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.15
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.15
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.15
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.19
rrl 1474170 n.513G>T non_coding_transcript_exon_variant 0.14
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.16
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.11
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.11
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.12
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.14
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.14
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.12
rrl 1475381 n.1724G>T non_coding_transcript_exon_variant 0.12
rrl 1475382 n.1725A>C non_coding_transcript_exon_variant 0.12
rrl 1475395 n.1738T>G non_coding_transcript_exon_variant 0.12
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.12
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.12
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.12
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.12
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.12
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.12
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.12
rrl 1475847 n.2190A>G non_coding_transcript_exon_variant 0.13
rrl 1475993 n.2336C>A non_coding_transcript_exon_variant 0.22
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.25
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.22
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.22
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.22
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.22
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.2
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.2
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.2
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.2
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.27
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.25
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.25
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.22
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.25
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.27
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.27
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.14
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.12