Rv3596c - c.1938G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
105 Sensitive
4 RR-TB
30 HR-TB
8 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 115 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage2.2.1 | 16 |
| lineage3 | 3 |
| La1.7;lineage4.9 | 4 |
| La1;lineage4.9 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4 | 3 |
| lineage4.3.2.1 | 3 |
| lineage1.1.1;lineage4 | 1 |
| La1.8.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.1.1.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage1.1.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| 1 | |
| lineage2;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage4.1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.3.3 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 190 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR400345 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR7236330 | Other | La1.8.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None |
|---|
