Rv0667 - c.843G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
1 RR-TB
42 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 7 |
| lineage4.9 | 50 |
| lineage4.9;lineage9 | 2 |
| lineage4.5 | 1 |
| lineage3.1.2.1 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage3 | 3 |
| M.canetti;lineage4.9 | 3 |
| lineage2.2 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.3 | 2 |
| 2 | |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage6.1.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1.2 | 3 |
| lineage4.3.4.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.1 | 1 |
| La2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 109 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR752229 | Other | lineage4.5 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4798823 | HR-TB | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR5431730 | Other | La1.8.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4769452 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR323039 | HR-TB | La2;lineage4.9 | None |
|---|
