Rv1630 - c.294C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
12 RR-TB
30 HR-TB
12 MDR-TB
1 Pre-XDR-TB
3 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 31 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage2.2.1 | 14 |
| lineage4.3.3 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.3.2.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.8 | 5 |
| lineage1.1.1;lineage4 | 1 |
| 3 | |
| M.canetti;lineage2.2 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| lineage4.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.2 | 3 |
| lineage4.3.4.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage3 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4 | 1 |
| lineage4.7 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 107 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5535933 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR212001 | HR-TB | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR369151 | Other | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR752229 | Other | lineage4.5 | None | ERR9786526 | Other | lineage4.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR12006550 | Sensitive | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4815079 | RR-TB | lineage3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786525 | Other | lineage4 | None | ERR9786507 | RR-TB | lineage4.7 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
|---|
