Rv0668 - c.3798C>G
Drug resistance types
51 Sensitive
1 RR-TB
131 HR-TB
12 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
86 Other
lineage Counts
| lineage | Count |
|---|---|
| 88 | |
| lineage4.8 | 4 |
| lineage4;lineage1.1.2 | 1 |
| lineage3 | 10 |
| lineage2.1 | 1 |
| lineage4.9 | 62 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1 | 15 |
| lineage4.1.1 | 1 |
| lineage4.1 | 2 |
| lineage4 | 17 |
| lineage4.3.3 | 1 |
| lineage4.1.2.1 | 18 |
| lineage4.1.1.3.1 | 1 |
| lineage2.2 | 10 |
| lineage2.2.1.1 | 5 |
| lineage1.1 | 1 |
| lineage4.6.2.2 | 4 |
| lineage3.1 | 2 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.4.1.2 | 1 |
| La1 | 1 |
| La1.8.1 | 3 |
| lineage6.1.1 | 2 |
| La1.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.5 | 2 |
| lineage4.3.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| La3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 284 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | ERR216977 | Other | lineage3 | None | ERR4816656 | HR-TB | None | ERR212001 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4816470 | Other | lineage3 | None | SRR3675571 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR3275215 | Other | lineage4.1.2.1 | nl | SRR5341408 | Sensitive | lineage3 | None | ERR2514008 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR5341456 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | SRR5341330 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2660539 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | None | SRR6046397 | Other | None | SRR6045952 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR2446563 | Other | lineage2.2.1 | nl | SRR6325448 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6325447 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR294248 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7535086 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323055 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR3283010 | Other | La1 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283021 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283035 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769427 | Other | La1.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811493 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736839 | Other | None | ERR702404 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR752229 | Other | lineage4.5 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None | ERR9896147 | Sensitive | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1169306 | Other | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173055 | MDR-TB | lineage2.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR17658565 | Other | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6325445 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR161149 | Other | lineage4.3.4.2.1 | mw | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None |
|---|
