EBG00000313339 - n.1052G>A
Drug resistance types
54 Sensitive
23 RR-TB
9 HR-TB
20 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
141 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 2 |
| lineage4.8 | 13 |
| lineage4.1.1.3 | 6 |
| lineage4.1.2.1 | 20 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.3.3 | 8 |
| lineage2.2.1 | 20 |
| lineage4.8.1 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4 | 10 |
| lineage4.3.2 | 2 |
| lineage4.9 | 55 |
| lineage4.3.4.1 | 3 |
| lineage4.3 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.1 | 4 |
| lineage4.3.4 | 2 |
| 5 | |
| La1.8.1 | 1 |
| lineage4.2.2.2 | 5 |
| lineage5.1.4 | 1 |
| lineage4.6 | 3 |
| lineage3.1.1 | 5 |
| lineage3 | 21 |
| lineage4.3.1.1 | 5 |
| lineage1.2.2.2 | 2 |
| lineage4.4.1.1 | 12 |
| lineage4.3.2.1 | 2 |
| lineage4.8.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.6.3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage6 | 1 |
| lineage4.4.1.2 | 2 |
| lineage1.1.2 | 4 |
| lineage4.7 | 4 |
| lineage3.1.2 | 4 |
| lineage1.2.1.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage1.2.2 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.1 | 3 |
| lineage3.1 | 1 |
| lineage4.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 254 |
Geographic prevalence
Country level data for this variant is available for 29 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR7131030 | Other | lineage4.1.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR9971032 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971222 | RR-TB | lineage2.2.1.1 | None | SRR7131174 | Other | lineage4 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR9971144 | RR-TB | lineage2.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796557 | Other | lineage4 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796586 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796615 | Other | lineage4 | None | ERR10796599 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796634 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR4796577 | MDR-TB | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR4188013 | Other | La1.8.1 | None | ERR3957933 | Sensitive | lineage4.1.1.3 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR751296 | Sensitive | lineage5.1.4 | gh | ERR6197040 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117806 | Other | lineage4.8 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117822 | Sensitive | lineage4.1.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175304 | MDR-TB | lineage4.3.3 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | ERR9117841 | Other | lineage4.8.2 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11342679 | Other | lineage4.6.3 | None | SRR11349153 | RR-TB | lineage4.1.1 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18337398 | Sensitive | lineage4.4.1.1 | None | SRR18912070 | Sensitive | lineage4.8 | None | SRR19304094 | Other | lineage6 | None | SRR18913750 | Other | lineage2.2.1 | None | SRR19303808 | Sensitive | lineage4.1.2.1 | None | SRR19303985 | Other | lineage4.8 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR19304109 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR22048377 | Sensitive | lineage4.8 | None | SRR22048392 | Other | lineage4.8 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | SRR22048374 | Sensitive | lineage4.8 | None | SRR24035891 | Sensitive | lineage4.1.2.1 | None | SRR3675474 | Other | lineage4.1.1 | None | SRR3675491 | Other | lineage4.7 | None | ERR2027250 | Other | lineage3.1.2 | None | SRR3675234 | Other | None | SRR3675256 | Other | lineage4.7 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675291 | Sensitive | lineage4.6 | gb | SRR3675230 | RR-TB | lineage3 | None | SRR1735628 | Sensitive | lineage4.1.2.1 | gb | ERR2027255 | HR-TB | lineage4.4.1.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR5007183 | MDR-TB | lineage4.3.4.1 | None | SRR5007186 | Other | lineage4.6 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR2513913 | Sensitive | lineage3 | gb | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820801 | Other | lineage1.2.2 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR6045432 | Other | lineage3 | gb | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045485 | Other | lineage4.9 | None | SRR6045526 | HR-TB | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045614 | Other | lineage4.8 | None | SRR6046135 | Other | lineage4.1.2.1 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045616 | Other | lineage4.4.1.2 | gb | SRR6045664 | Other | lineage4.2.1 | None | SRR6045705 | Other | lineage4.9 | None | SRR5818572 | Sensitive | lineage4.2.2.2 | None | SRR6045743 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6045778 | Other | lineage3.1 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR5818667 | Sensitive | lineage4.4.1.1 | dj | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045894 | Other | lineage4.8 | None | ERR2851359 | Other | lineage4.9 | None | SRR6044817 | Other | lineage3 | None | SRR6044993 | Other | lineage3 | None | SRR6046173 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045248 | Other | lineage3.1.1 | None | SRR6045289 | Other | None | SRR6045295 | Other | lineage4.7 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046064 | Other | lineage3 | gb | SRR6045424 | Other | lineage1.1.2 | None | SRR6046291 | Other | lineage3 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6045925 | Other | lineage4.2 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044945 | HR-TB | lineage4.1.2.1 | gb | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045989 | Other | lineage2.2.1 | gb | SRR6045159 | Other | lineage3.1.1 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046246 | Other | lineage3 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046442 | Other | lineage3 | None | SRR6046457 | Other | lineage3 | gb | SRR6046447 | Sensitive | lineage4.8 | gb | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046508 | Sensitive | lineage3.1.2.2 | gb | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046607 | Other | lineage3 | None | SRR6046641 | Other | lineage4.8 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046729 | Other | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046766 | Other | lineage3.1.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR6046852 | MDR-TB | lineage3 | None | SRR6153150 | Other | lineage3.1.1 | None | SRR6046905 | Other | lineage3 | gb | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6153166 | Other | lineage1.2.1.2.1 | ca | SRR6398010 | Sensitive | lineage4.2.1 | ca | SRR6046679 | Other | lineage3 | gb |
|---|
