Rv3596c - c.249C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
45 Sensitive
4 RR-TB
30 HR-TB
9 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 42 |
| 3 | |
| lineage3 | 4 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.8 | 4 |
| lineage4.9.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage6.1.1 | 2 |
| M.canetti;lineage1 | 1 |
| lineage2.2.1 | 12 |
| lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| La3;lineage4.9 | 6 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.3.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.2;lineage4.9 | 3 |
| lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2.2 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.3 | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4821338 | Sensitive | lineage3 | gb | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR11466061 | Sensitive | lineage4.9.1 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR3675247 | Other | lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR29097037 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4798823 | HR-TB | None | SRR3675522 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR4812155 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR12708419 | Other | lineage4.3.3 | None |
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