lineage | Count |
---|---|
27 | |
lineage4 | 17 |
lineage4.2.1 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4.9 | 51 |
lineage4.6.2.2 | 3 |
lineage4.3.4.2.1;lineage4.1.2.1 | 1 |
lineage4.4.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.6.1.1 | 2 |
lineage2.2 | 5 |
lineage2.2.1 | 6 |
lineage4.3.4 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage3 | 2 |
lineage4.8 | 1 |
lineage2.2.1.2 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.3.3 | 1 |
spoligotype | Count |
---|---|
None | 133 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046225 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046046 | Other | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046492 | Other | None | ERR323037 | HR-TB | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4 | None | SRR7535082 | Sensitive | lineage4 | None | SRR8217918 | HR-TB | None | ERR11465234 | Sensitive | lineage4.3.4.2.1;lineage4.1.2.1 | None | ERR323045 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR1063862 | HR-TB | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3445503 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4797474 | Other | None | ERR6359070 | Other | lineage4.9 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR990545 | Other | lineage3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR24061597 | Sensitive | None | ERR176779 | HR-TB | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR176778 | HR-TB | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176651 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR181887 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819075 | Other | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None |
---|