Rv3596c - c.1140G>C


Drug resistance types
49 Sensitive 12 RR-TB 80 HR-TB 32 MDR-TB 8 Pre-XDR-TB 1 XDR-TB 158 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9 12
lineage4 5
lineage4.9 123
La1.7;M.canetti;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 11
lineage4.5 1
La1.7.1;La1.7.X-unk4 1
lineage3 3
lineage4.9;lineage9 3
lineage2.2.1 16
lineage1.2.2.2 2
lineage4.1.2.1 12
La1.7.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 10
lineage4.9;lineage6.3 8
lineage4.8 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage2.2.1;lineage3;lineage4 1
lineage5.2 2
La3;lineage4.8 2
lineage1.2.1.2.1 1
lineage2;lineage4 1
lineage2.2.1.1 2
lineage4.1.1.3 3
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage3 1
20
lineage4.2;lineage4.9 2
lineage4.3.4.2.1 3
lineage4.3.2;lineage4.9 1
lineage4.4.1.1.1 2
La1.8.1 1
lineage4.3.3 2
lineage6.1.1 2
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage6.3 2
lineage2.2 2
La3;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage2.2.2 1
lineage4.1.1.1 2
La3;lineage2.2.1 1
lineage2.2.2 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage2.2.2;lineage4 1
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage4.9 2
La2;lineage4.9;lineage9 1
lineage4.1.3 2
La3 2
M.canetti;lineage2.1;lineage4.9 2
lineage2.1 3
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.4.1.1 1
La1.2.BCG 1
lineage4.6.3;lineage4.9 1
La1.7.1 1
lineage4.3.2.1 2
lineage4.1.2 1
La3;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2 1
lineage4.7 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;lineage1.1.2 1
La2;lineage4.9 2
lineage2.2.1;lineage4 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage1;lineage4.9 1
lineage2.2.1;lineage6.3 1
lineage3.1.2.2 1
lineage4.4.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage3.1.2.1 1
lineage4.6.2.2 1
lineage2.2.1;lineage4.9 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1 1
lineage4.2;lineage4.6.3;lineage4.9 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.2.BCG;La1.8.1 1
lineage3.1.2.1;lineage3.1.2.2 1
lineage4.6.1.1 1
lineage6.3.1 1
lineage6.1.3 1
La2;lineage2.2 1
lineage1.1.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage4.9 1
lineage2.2.1;lineage3 1
spoligotype Counts
spoligotype Count
None 340
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR349265 Other lineage4.9 None
ERR6865502 Sensitive lineage4 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR26159043 Other lineage4.9 None
SRR11662694 Other lineage4.9 None
ERR4816548 HR-TB lineage4.5 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4797588 MDR-TB lineage3 None
ERR4798504 RR-TB lineage3 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR4820854 Other lineage4.1.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044942 HR-TB lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR926163 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR25827605 Pre-XDR-TB lineage2.2.1;lineage3;lineage4 None
ERR4872094 MDR-TB lineage5.2 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR926154 Sensitive lineage4.9 None
ERR971389 Sensitive lineage4.9 None
ERR13267017 Pre-XDR-TB lineage2.2.1 None
ERR1063849 HR-TB lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR29097026 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR3675494 RR-TB lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR373947 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR373946 Sensitive lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR9971112 Other lineage2.2.1 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1183144 Other lineage2.2.1 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4818110 Sensitive lineage4.9 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR7131023 Other lineage4.1.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR3797070 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR13861400 Other lineage4.9 None
SRR20632814 Sensitive lineage4.9 None
ERR987722 MDR-TB None
SRR6789621 Other lineage4.9 None
ERR4817060 Other None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR349264 Sensitive lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
ERR349330 Sensitive lineage4.9 None
ERR4819462 Sensitive lineage4.9 None
ERR926156 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR9786604 Other None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR11462861 Other La1.8.1 None
ERR4769530 RR-TB lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR3675572 Other None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6046141 Other lineage4.9 None
ERR4817915 Other lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR1180406 Sensitive lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
ERR9787014 Other lineage6.1.1 None
ERR4817893 Other La3;lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR29772570 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4188247 HR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR926162 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR736848 Other lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4769508 RR-TB lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR926160 Sensitive lineage4.9 None
SRR29093099 MDR-TB La3;lineage2.2.2 None
ERR1035157 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR4178226 Sensitive lineage4 None
ERR9786617 Other lineage4.1.1.1 None
SRR22424787 Sensitive lineage4.9 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
SRR28119753 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR4815441 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR29017461 Other La3;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR7535086 Other None
ERR926159 Sensitive lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR11049020 Other lineage4.8 None
ERR4797201 Other lineage1.2.2.2 None
ERR4596910 Sensitive lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR926164 Other lineage4.9 None
ERR9117709 Other None
ERR4816656 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR21677886 Sensitive lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1180399 Sensitive lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR3799304 Other lineage6.1.1 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR29050928 Other lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR29097037 Other lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR9119500 MDR-TB lineage5.2 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR28119805 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR176778 HR-TB lineage4.9 None
ERR363446 Sensitive lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR7240492 HR-TB La1.7.1 None
SRR12708396 MDR-TB lineage4.3.2.1 None
SRR1180312 Sensitive lineage4.9 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4818347 Other lineage4.1.2 None
ERR1063858 HR-TB lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR4796577 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
SRR1175506 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR369158 Other lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR1180444 Sensitive lineage4.9 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR9786682 Other lineage4.1.2.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4820773 HR-TB lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
ERR363421 Sensitive lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR15368973 Other lineage4.9 None
ERR4815604 Other None
ERR736856 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR6046066 Other lineage4.9 None
SRR6789626 Other None
SRR29051077 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816999 Other None
ERR926158 Sensitive lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR20969542 Other lineage4.4.2 None
SRR29093909 Other lineage4.9 None
SRR29051093 Other lineage4.9 None
SRR3675236 Other None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
ERR4800341 Other lineage3 None
SRR28119777 Other lineage4.9 None
ERR363502 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR29096150 Other lineage4.9 None
SRR29096291 Sensitive lineage2.2.1 None
SRR12416840 MDR-TB lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR13861332 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR13591342 HR-TB lineage4.1.1.3 None
ERR176740 Other lineage4.9 None
ERR349266 Sensitive lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1180147 Other lineage2.2.1.1 None
SRR7496472 Other lineage4.9 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
ERR2514692 Other None
SRR25827682 Other None
ERR9787197 Other None
ERR234659 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4818536 Other lineage4.9 None
SRR6044815 Other lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR4819781 Other lineage2.2.1 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR926165 Sensitive lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR3675457 Other lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR29096541 Other lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR4798823 HR-TB lineage4 None
ERR926157 Sensitive lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR176651 Other lineage4.9 None
ERR369162 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR6045359 Sensitive lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR6358755 Other lineage4.6.1.1 None
SRR18213713 HR-TB None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1175074 Other None
ERR9787336 RR-TB lineage6.1.3 None
SRR1180300 Sensitive lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR363498 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
SRR3675214 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR9786627 Other lineage4.1.2.1 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4178309 Other lineage4.1.2.1 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR1196494 MDR-TB None
ERR4816585 Other lineage2.2 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR108125 RR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR13861153 Other lineage4.9 None