Rv3596c - c.1140G>C


Drug resistance types
49 Sensitive 12 RR-TB 79 HR-TB 32 MDR-TB 8 Pre-XDR-TB 1 XDR-TB 158 Other
lineage Counts
lineage Count
lineage4.3.2.1 2
lineage4.9 123
20
La3;lineage2.2.2 1
lineage2.2.1;lineage3 1
lineage1;lineage4.9 1
lineage4.9;lineage9 3
lineage4 5
lineage2.2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9 11
lineage4.5 1
lineage4.1.1.1 2
lineage3.1.2.2 1
La3;lineage2.2.1 1
lineage2.2.2 1
lineage4.1.2.1 12
lineage1.2.2.2 2
lineage4.4.2 1
La1.7.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 9
lineage4.9;lineage6.3 8
La2;lineage4.9;lineage9 1
lineage4.1.3 2
lineage2.2.1;lineage3;lineage4 1
lineage2.1;lineage4.9 12
lineage2.2.1 16
La3;lineage4.8 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.1 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage2.2.1.1 2
La3;M.canetti;lineage3.1 1
lineage4.2;lineage4.9 2
lineage4.3.3 2
lineage4.6.3;lineage4.9 1
lineage4.3.4.2.1 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1 1
lineage4.2;lineage4.6.3;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage3.1.2.1;lineage3.1.2.2 1
lineage4.4.1.1.1 2
La2;lineage2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La2;lineage4.9 2
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage3 3
lineage2.2.2;lineage4 1
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage4.9 2
lineage4.8 4
La3 2
M.canetti;lineage2.1;lineage6.3 1
lineage6.1.1 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.1.1.3 3
lineage4.6.2.2 1
La1.2.BCG 1
M.canetti;lineage4.9 2
M.canetti;lineage2.1;lineage3 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1 3
La1.7.1 1
lineage4.1.2 1
lineage4.6.1.1 1
lineage6.3.1 1
lineage6.1.3 1
La3;lineage2 1
La3;lineage2.1;lineage4.9 2
lineage1.1.2 1
lineage2.1;lineage6.3 2
lineage4.6.3;lineage4.9;lineage6.3 1
La1.7;M.canetti;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage2.1;lineage4.9 2
lineage5.2 2
lineage3.1.2.1 1
lineage1.2.1.2.1 1
lineage2;lineage4 1
lineage2.2.1;lineage4.9 1
M.canetti;lineage2.1 1
lineage4.3.2;lineage4.9 1
La1.8.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
lineage4.7 1
La3;lineage1.1.2 1
La3;M.canetti;lineage4.9 1
lineage2.2 2
spoligotype Counts
spoligotype Count
None 339
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR12708407 HR-TB lineage4.3.2.1 None
SRR6045526 Other lineage4.9 None
ERR4815604 Other None
SRR29093099 MDR-TB La3;lineage2.2.2 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR181887 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR4769521 RR-TB lineage4.9 None
SRR29051077 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR6865502 Sensitive lineage4 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4816999 Other None
ERR4816548 HR-TB lineage4.5 None
ERR926158 Sensitive lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
SRR22424787 Sensitive lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
ERR6865513 Other lineage4.1.2.1 None
ERR1063846 HR-TB lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR4820854 Other lineage4.1.2.1 None
SRR20969542 Other lineage4.4.2 None
SRR29093909 Other lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1183054 Sensitive lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4797201 Other lineage1.2.2.2 None
ERR4596910 Sensitive lineage4.9 None
SRR25827605 Pre-XDR-TB lineage2.2.1;lineage3;lineage4 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR926164 Other lineage4.9 None
ERR363502 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR29097026 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR29096291 Sensitive lineage2.2.1 None
ERR12015083 Other La3;lineage4.8 None
SRR1180399 Sensitive lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR29050928 Other lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR1180413 Sensitive lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR373946 Sensitive lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR7496472 Other lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR12708419 Other lineage4.3.3 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR987722 MDR-TB None
SRR6789621 Other lineage4.9 None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None
ERR4818536 Other lineage4.9 None
ERR181824 HR-TB lineage4.9 None
ERR349264 Sensitive lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR176778 HR-TB lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1180312 Sensitive lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675232 Other lineage4.1.2.1 None
ERR1063858 HR-TB lineage4.9 None
SRR29096541 Other lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR4798823 HR-TB lineage4 None
ERR926157 Sensitive lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1175074 Other None
SRR1180300 Sensitive lineage4.9 None
SRR3675214 Other lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR18003019 Other lineage2.2.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4188247 HR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR12708415 HR-TB lineage2.2.1 None
ERR736848 Other lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4769508 RR-TB lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR349265 Other lineage4.9 None
SRR6789626 Other None
SRR11662694 Other lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR4798504 RR-TB lineage3 None
SRR28119753 Other lineage4.9 None
ERR926161 Sensitive lineage4.9 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6045371 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR29051093 Other lineage4.9 None
ERR926163 Other lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4819877 HR-TB lineage4.9 None
ERR11049020 Other lineage4.8 None
ERR4800341 Other lineage3 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
ERR971389 Sensitive lineage4.9 None
ERR13267017 Pre-XDR-TB lineage2.2.1 None
SRR28119777 Other lineage4.9 None
ERR9117709 Other None
SRR21677886 Sensitive lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675494 RR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR3799304 Other lineage6.1.1 None
ERR373947 Other lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR13591342 HR-TB lineage4.1.1.3 None
ERR212125 HR-TB lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183144 Other lineage2.2.1 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4818110 Sensitive lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR7131023 Other lineage4.1.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR3797070 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
SRR25827682 Other None
ERR9787197 Other None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR349330 Sensitive lineage4.9 None
ERR363446 Sensitive lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR7240492 HR-TB La1.7.1 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR926165 Sensitive lineage4.9 None
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
ERR4817915 Other lineage4.9 None
ERR4818347 Other lineage4.1.2 None
ERR6866807 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR4796577 HR-TB None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR1180406 Sensitive lineage4.9 None
ERR369162 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
ERR9787014 Other lineage6.1.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR18213713 HR-TB None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR369158 Other lineage4.9 None
ERR9787336 RR-TB lineage6.1.3 None
SRR20969677 HR-TB La3;lineage2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR3797069 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR4178309 Other lineage4.1.2.1 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR1196494 MDR-TB None
ERR108125 RR-TB lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR926160 Sensitive lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR26159043 Other lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4797588 MDR-TB lineage3 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7535086 Other None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR926154 Sensitive lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR1063849 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR29096150 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR28119752 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR176740 Other lineage4.9 None
ERR349266 Sensitive lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR9971112 Other lineage2.2.1 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR349296 Sensitive lineage4.9 None
SRR29097037 Other lineage4.9 None
SRR13861400 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR20632814 Sensitive lineage4.9 None
ERR2514692 Other None
SRR28119805 Other lineage4.9 None
ERR4817060 Other None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6044815 Other lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR4819462 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR9786604 Other None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR11462861 Other La1.8.1 None
ERR4769530 RR-TB lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR21732980 Other lineage4.3.3 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR176651 Other lineage4.9 None
SRR6045359 Sensitive lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817893 Other La3;lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
SRR29772570 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR363498 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR9786682 Other lineage4.1.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR12708418 HR-TB lineage2.2.1 None
ERR4816585 Other lineage2.2 None
ERR4799547 HR-TB lineage2.2.1 None
ERR363421 Sensitive lineage4.9 None