lineage | Count |
---|---|
lineage4 | 47 |
95 | |
lineage4.9 | 76 |
lineage4.2.1 | 1 |
lineage4.4.1.1 | 2 |
lineage4.3.4.2.1 | 3 |
lineage5.2 | 2 |
La2 | 1 |
lineage3.1 | 2 |
lineage2.2.1 | 15 |
lineage4.1.2.1 | 14 |
lineage4.1.1.3 | 2 |
lineage2.2 | 4 |
lineage4.8 | 7 |
La1 | 1 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
lineage5.1.2 | 1 |
lineage4.9;La1.3 | 1 |
lineage3 | 5 |
lineage1.2.2.2 | 1 |
lineage2 | 4 |
lineage3.1.2 | 1 |
lineage3.1.2.1 | 1 |
lineage4.8;La3 | 2 |
lineage4.6.1.1 | 2 |
lineage4.3.4 | 1 |
lineage1.1.2 | 2 |
lineage4.1 | 1 |
lineage4.1.1 | 2 |
lineage4.6.2.2 | 1 |
lineage2.2.2 | 2 |
lineage6 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage6.3.1 | 1 |
La1.8.1 | 2 |
lineage4.4.1.1.1 | 2 |
lineage2.2.1.1 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.3.4.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.5 | 2 |
lineage4.4.2 | 1 |
lineage4.3.3 | 2 |
lineage4.9;La3 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4;lineage3;lineage2.2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
lineage4.1.2 | 1 |
lineage1.1.1 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 331 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045010 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046397 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046802 | Other | lineage4 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6982196 | Sensitive | None | ERR502532 | HR-TB | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7535086 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1034634 | HR-TB | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR11049020 | Other | lineage4.8 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283036 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR3445503 | HR-TB | None | ERR349299 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4188247 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798431 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798504 | Other | lineage3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4810741 | HR-TB | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR9117709 | HR-TB | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787197 | Other | None | ERR9787336 | Other | lineage6 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987722 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1169194 | Other | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11462861 | Other | La1.8.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172234 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173118 | Other | None | SRR1174897 | HR-TB | None | SRR1175074 | MDR-TB | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837614 | Sensitive | lineage4.9 | None | SRR13837638 | Other | lineage4.9 | None | SRR13837853 | Sensitive | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861243 | HR-TB | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR16157123 | Other | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR19303884 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR25827682 | Other | None | SRR20969677 | HR-TB | lineage2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692887 | Other | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR25827605 | Pre-XDR-TB | lineage4;lineage3;lineage2.2.1 | None | ERR176779 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814683 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR4815752 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR1750907 | RR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176740 | HR-TB | None | SRR3675503 | Sensitive | lineage4.9 | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | ERR4817060 | RR-TB | None | SRR3742665 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818394 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818615 | Other | None | ERR4819280 | Sensitive | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045526 | HR-TB | None | SRR5341470 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None |
---|