Rv3596c - c.942C>T
Drug resistance types
63 Sensitive
2 RR-TB
28 HR-TB
13 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 71 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1 | 9 |
| lineage1.2.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4.4.2 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| 1 | |
| M.canetti;lineage4.2 | 1 |
| La1.2.BCG | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 2 |
| lineage4.5 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736848 | Other | lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675522 | Other | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11662694 | Other | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3797029 | Other | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR12708416 | Sensitive | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1915487 | Other | La1.2.BCG | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4816306 | HR-TB | lineage1.2.2.2 | gb | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None |
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