Rv3596c - c.942C>T


Drug resistance types
63 Sensitive 2 RR-TB 28 HR-TB 13 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 37 Other
lineage Counts
lineage Count
lineage4.9 71
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.9;lineage7 3
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
lineage1.1.1;lineage4 1
lineage4.3.3 2
lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.1.3 1
lineage4.2;lineage4.9 1
lineage4.5 1
lineage2.2.1 9
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.1;lineage4.9 1
lineage4.4.1.1 1
lineage2.2.2 1
M.canetti;lineage1 1
lineage4.9;lineage9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.7;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La1.2.BCG 1
lineage4.3.2.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.2.1 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.3.4.2.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
lineage4.3.1;lineage4.9;lineage6 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1;lineage2;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1;lineage4.9 2
La1;lineage4.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 1
1
lineage5.1.4 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage1;lineage4.9 1
La1.7;lineage4.9;lineage6 1
M.canetti;lineage4.2;lineage4.9 2
lineage1.2.2.2 2
La1.6;La3;M.canetti;lineage4.2.2 1
lineage2.2.1;lineage4 1
lineage4.1.1.3 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage1.2.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.4.2 1
lineage4 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.3.1 1
lineage4.4.1.2 1
spoligotype Counts
spoligotype Count
None 144
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR369157 Sensitive lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR6045892 Sensitive lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR2851356 Sensitive lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR926156 Sensitive lineage4.9 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR926157 Sensitive lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
SRR12708414 HR-TB lineage2.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR502511 Sensitive lineage4.9 None
SRR12708384 Sensitive lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR702405 Sensitive lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
ERR736848 Other lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
ERR369161 Sensitive lineage4.9 None
ERR373945 Sensitive lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
SRR14801749 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR1175508 Sensitive lineage4.9 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SRR15014655 Other M.canetti;lineage1 None
ERR926161 Sensitive lineage4.9 None
ERR4796351 Sensitive lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR363509 Sensitive lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1915487 Other La1.2.BCG None
ERR4769442 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR4797474 Sensitive lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR2512770 Sensitive lineage4.2.1 None
SRR9971114 Other lineage2.2.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
ERR400320 Sensitive lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR6866410 Sensitive lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
SRR3675473 Sensitive lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR926160 Sensitive lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR11662694 Other lineage4.9 None
SRR22424787 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675387 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR779852 Sensitive lineage4.9 None
SRR12708416 Sensitive None
ERR2513283 Sensitive lineage5.1.4 None
SRR5341456 Other lineage4.9 None
ERR363456 Sensitive lineage4.9 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR181824 HR-TB lineage4.9 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
ERR2693252 Sensitive lineage4.9 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4816306 HR-TB lineage1.2.2.2 gb
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR3675522 Other lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR12708413 HR-TB lineage4.1.1.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR12708371 HR-TB lineage4.1.1.3 None
ERR4814734 Other lineage1.2.1.1 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR736856 Sensitive lineage4.9 None
ERR502510 Sensitive lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR1063846 HR-TB lineage4.9 None
ERR400326 Other lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR12708392 Other lineage2.2.1 None
SRR10808805 Other La1;lineage4.9 None
SRR20969542 Other lineage4.4.2 None
SRR5341323 Sensitive lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR926163 Other lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR971389 Sensitive lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR926164 Other lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR21677886 Sensitive lineage4.9 None