Rv0668 - c.45T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
78 Sensitive
3 RR-TB
36 HR-TB
13 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 100 |
| lineage4 | 4 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 14 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.9;lineage9 | 2 |
| La3;lineage4.9 | 8 |
| lineage4.4.1.2 | 1 |
| lineage3 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7 | 2 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 3 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| La2;lineage4.9 | 1 |
| lineage4.1.2.1 | 5 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.8 | 2 |
| lineage3.1.2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| La1.8.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1.2.2.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2 | 1 |
| La1.2.BCG | 1 |
| 1 | |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 190 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045010 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR17832802 | HR-TB | lineage3 | None | SRR5431730 | Other | La1.8.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | SRR29097037 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
|---|
