Rv0407 - c.315G>C
Drug resistance types
7 Sensitive
5 RR-TB
39 HR-TB
6 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| 11 | |
| lineage2.1;lineage4.9 | 6 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9 | 25 |
| lineage4.1.2.1 | 8 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage2.1;lineage6.3 | 2 |
| La1.7;lineage4.9 | 5 |
| lineage3 | 3 |
| La3;lineage4.9 | 4 |
| lineage3.1.2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.3.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2.1 | 9 |
| lineage2.2.1.1 | 4 |
| La1.2.BCG | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.6.2.2 | 3 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4 | 2 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.1.3 | 2 |
| lineage1.2.2.2 | 2 |
| lineage2.1 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.8 | 1 |
| lineage4.5 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 138 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786604 | Other | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR4800341 | Other | lineage3 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3797070 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | ERR2027263 | Other | lineage4 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR9786507 | RR-TB | lineage4.7 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4819241 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
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