SRR1011452
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011453
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011457
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510361
|
Pre-XDR-TB
|
lineage2.2.1
|
pk
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
SAMN01925650
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173780
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SAMN02585959
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1181391
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1193881
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02585982
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02586079
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9992871
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR29289234
|
MDR-TB
|
lineage3
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
ERR4828787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773708
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR1183043
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062846
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586017
|
XDR-TB
|
lineage4.3.3
|
za
|
SRR1180369
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288988
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
SRR1175065
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586104
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11488588
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR13289260
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SAMN02350415
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02053773
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7361978
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13289393
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1144815
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02350414
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1173142
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180301
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9970990
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11349177
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173391
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043123
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806900
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11349135
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR2515344
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1181243
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3743500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN01925615
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350416
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11465189
|
RR-TB
|
lineage4.9.1
|
None
|
ERR11488842
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13267430
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
ERR4799775
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
SRR9971123
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
SRR1167293
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
SAMN01925666
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
SAMN01925639
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361975
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925668
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173276
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR11773739
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3055713
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1165723
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924208
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28393332
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR11773705
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773727
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28498400
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR833033
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288743
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062843
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773752
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180388
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
SRR1167183
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
ERR11773709
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9992614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992908
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SAMN02350429
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062844
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR924206
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184300
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR2510321
|
Pre-XDR-TB
|
lineage2.2.1
|
pk
|
SRR11349166
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806993
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26397809
|
XDR-TB
|
lineage4.3.4.1
|
None
|
SRR9971166
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR9971375
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR9971332
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361989
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286202
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10868972
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1873435
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403569
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1173795
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1165674
|
Pre-XDR-TB
|
lineage2;lineage4.3.3
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMEA2534676
|
MDR-TB
|
lineage2.2.1
|
kz
|
SAMN02053748
|
Pre-XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SAMN02053766
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9971315
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13285091
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1062835
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR833105
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR833121
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924219
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924207
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173789
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
SAMN02403621
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1167185
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR1169248
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1196510
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833130
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096324
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29093616
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011466
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315624
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062827
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02053744
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925653
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315605
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180233
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR552478
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315604
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10748074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7361962
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350421
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9992629
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173349
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7737634
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR1173024
|
Sensitive
|
lineage4.3.3
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR1169212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1184326
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847789
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR15901694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR1034984
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN01925641
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971187
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4828910
|
MDR-TB
|
lineage4.8
|
None
|
SRR1165660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4828774
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1011458
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062839
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181357
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196530
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1011456
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196504
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847792
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847785
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
SAMN02053807
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR1184331
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR9993040
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833077
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1196571
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847777
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924693
|
Pre-XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR14782129
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10610199
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184333
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6855822
|
Pre-XDR-TB
|
lineage4.3.2.1;lineage4.3.3
|
None
|
SAMN02586065
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4831575
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR832991
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361995
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833013
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833058
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1196575
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9806902
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924227
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011470
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831538
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1196503
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2515776
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR473327
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173354
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
SRR924234
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR8758885
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR552479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173200
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5918119
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7737921
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02586041
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586084
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1019172
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175325
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833078
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847779
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR9992957
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR11773740
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN01925670
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350425
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02350430
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02350431
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586018
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062842
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12708401
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR924692
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2515175
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7911627
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
za
|
SAMN02586081
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1011471
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11349167
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288794
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172793
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172918
|
Other
|
lineage4.3.3
|
None
|
SRR1180293
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992791
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR9993074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173199
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180379
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924225
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924232
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9970994
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847776
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
ERR8975982
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
SAMN02586073
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1011474
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172254
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169271
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181290
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971228
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR551452
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911566
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR21576680
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR832996
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173449
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315627
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1167341
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7737731
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1196511
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992673
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9970997
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR23340085
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN01828243
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR7781513
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9970995
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1184382
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02053760
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924694
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315684
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10868994
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488704
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488942
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830515
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
SRR1165225
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2515754
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830557
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403568
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7362014
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924223
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833059
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR1173518
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
SRR1175081
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4808975
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173180
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806901
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586090
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
SAMN02350422
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9971040
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5918042
|
XDR-TB
|
lineage4.3.3
|
za
|
ERR3132265
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10315583
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971039
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1173560
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR924212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924697
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924214
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3055714
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11043156
|
MDR-TB
|
lineage4.8
|
None
|
SRR1181396
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29055678
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992915
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1062825
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8025486
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315653
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315686
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924230
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196576
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
ERR10748187
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02350427
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR1011468
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361964
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510694
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR8975698
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
ERR7361984
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
SRR9971303
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181174
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992615
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN02585981
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR13286214
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924226
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286201
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.3.3
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8025683
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833137
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11488367
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29056339
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02350413
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586069
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1181138
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488368
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184297
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488703
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847801
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833029
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924216
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8025485
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992972
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11773725
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1173410
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1180330
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288915
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13289280
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971230
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9992999
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925638
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925654
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184366
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833086
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9970989
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4828779
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184301
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169155
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
ERR10610221
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN01925661
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925634
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062826
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4808877
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR26397810
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4809290
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1172869
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975004
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1011472
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925658
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11252599
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3
|
None
|
ERR4830554
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2515682
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11488533
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR040123
|
MDR-TB
|
lineage3.1.2.1
|
ug
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR2515622
|
Pre-XDR-TB
|
lineage4.3.2.1;lineage4.3.3
|
za
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
SRR847794
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8975605
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1169191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR13290805
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR924205
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315655
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403467
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8975819
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361988
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14781842
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02586066
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4831509
|
Pre-XDR-TB
|
lineage2.2.1
|
pk
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR2101539
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11488574
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011463
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830506
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1181376
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062822
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1167350
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847791
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR833173
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR1062823
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR833023
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925617
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833064
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4829041
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4829823
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR5153930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN01925667
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350433
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2510849
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR1173154
|
MDR-TB
|
lineage4.3.3;lineage4.4.1.1.1
|
None
|
SRR1173039
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR552049
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1184320
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9993123
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350411
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11773750
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847778
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062824
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925619
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR13286043
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR924220
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
ERR9806996
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180433
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011455
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488702
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847787
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR3085252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488483
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR23339947
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9992695
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1175022
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR847793
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SAMN01925663
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1019171
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315625
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586070
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR10748177
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1196515
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184378
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925618
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350426
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2515319
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02586068
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8975080
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586080
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4808988
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR9993119
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831550
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806821
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1173370
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN01925640
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR11465081
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR11080930
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1173448
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992647
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR924213
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181220
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196477
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975515
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SAMN02586076
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1165698
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925651
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8025610
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833115
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847788
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847796
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR13284043
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN01925614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975821
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4830524
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN01925636
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924215
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062828
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847783
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9970987
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1165629
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25389476
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02053781
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR1173101
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR15901693
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830469
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1011462
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6981952
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7737750
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR847800
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9971243
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR736839
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SAMN02350412
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062834
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172323
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975018
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1196542
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR2510693
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SAMN02586087
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924231
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971051
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062840
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR7911687
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29055619
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7361977
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011454
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925659
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|