Rv3806c - p.Val188Ala
Drug resistance types
5 Sensitive
14 RR-TB
16 HR-TB
113 MDR-TB
389 Pre-XDR-TB
23 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 402 |
| lineage4.3.4.1 | 3 |
| lineage3.1.1;lineage4.3.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.9 | 12 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1 | 27 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 21 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage4.2.1 | 2 |
| lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9 | 4 |
| lineage4.9.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.3.3;lineage4.4.1.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.2.2;lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2;lineage4.3.3 | 1 |
| lineage4.3.3;lineage4.4.1.1 | 2 |
| lineage4.5 | 2 |
| La3;M.canetti;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1;lineage4.3.3 | 3 |
| lineage4.1.1.3 | 2 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| La1.7.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.8.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.2.1;lineage4.3.3 | 2 |
| lineage2.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 566 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10748177 | Pre-XDR-TB | lineage4.3.3 | None | SRR26397809 | XDR-TB | lineage4.3.4.1 | None | SRR1011457 | Pre-XDR-TB | lineage4.3.3 | None | ERR7737750 | MDR-TB | lineage4.3.3 | None | SRR833121 | Pre-XDR-TB | lineage4.3.3 | None | SRR1167183 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR833115 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586080 | Pre-XDR-TB | lineage4.3.3 | za | SRR833086 | Pre-XDR-TB | lineage4.3.3 | za | SRR1062824 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181170 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925619 | Pre-XDR-TB | lineage4.3.3 | za | SRR1175487 | Sensitive | lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1062826 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169212 | Pre-XDR-TB | lineage4.3.3 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9806821 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349166 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925640 | Pre-XDR-TB | lineage4.3.3 | None | ERR7361959 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062840 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR7911687 | Pre-XDR-TB | lineage4.3.3 | za | ERR9992647 | XDR-TB | lineage4.3.3 | None | SRR847779 | Pre-XDR-TB | lineage4.3.3 | za | ERR9992695 | XDR-TB | lineage4.3.3 | None | SRR1175022 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975698 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315653 | Pre-XDR-TB | lineage4.3.3 | None | SRR924219 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925634 | Pre-XDR-TB | lineage4.3.3 | za | SRR2101539 | MDR-TB | lineage4.3.3 | None | ERR10748074 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992972 | MDR-TB | lineage4.3.3 | None | SRR1019172 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350421 | Pre-XDR-TB | lineage4.3.3 | za | SAMN01925650 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992629 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR1173199 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806900 | Pre-XDR-TB | lineage4.3.3 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1184326 | Pre-XDR-TB | lineage4.3.3 | None | SRR847789 | Pre-XDR-TB | lineage4.3.3 | za | ERR3132265 | MDR-TB | lineage4.3.3 | None | SRR10315583 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971039 | XDR-TB | lineage4.3.3 | None | SRR833058 | Pre-XDR-TB | lineage4.3.3 | za | SRR833013 | Pre-XDR-TB | lineage4.3.3 | None | SRR1011458 | Pre-XDR-TB | lineage4.3.3 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR9970989 | Pre-XDR-TB | lineage4.3.3 | None | ERR4828774 | Pre-XDR-TB | lineage2.2.1 | None | SRR924207 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586017 | XDR-TB | lineage4.3.3 | za | SRR3055714 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175065 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488588 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181396 | Pre-XDR-TB | lineage4.3.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR1169248 | MDR-TB | lineage4.3.3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SAMN02350415 | Pre-XDR-TB | lineage4.3.3 | za | ERR4829041 | Pre-XDR-TB | lineage2.2.1 | it | SRR833125 | Pre-XDR-TB | lineage4.3.3 | None | SRR6044815 | RR-TB | lineage4.9 | None | SRR1062827 | Pre-XDR-TB | lineage4.3.3 | None | SRR9970990 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971051 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169155 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | ERR2515344 | Pre-XDR-TB | lineage4.3.3 | za | ERR7361988 | Pre-XDR-TB | lineage4.3.3 | None | ERR10748187 | Pre-XDR-TB | lineage4.3.3 | None | SRR12708392 | Other | lineage2.2.1 | None | SAMN02053744 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173410 | HR-TB | lineage4.3.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN01925660 | Pre-XDR-TB | lineage4.3.3 | None | SRR924694 | Pre-XDR-TB | lineage4.3.3 | None | SRR924230 | Pre-XDR-TB | lineage4.3.3 | None | SRR847796 | Pre-XDR-TB | lineage4.3.3 | za | SRR1062844 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062843 | Pre-XDR-TB | lineage4.3.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11488842 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR7361995 | Pre-XDR-TB | lineage4.3.3 | None | SRR10868994 | Pre-XDR-TB | lineage4.3.3 | None | ERR2515776 | Pre-XDR-TB | lineage4.3.3 | za | SRR1196575 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4829823 | Pre-XDR-TB | lineage2.2.1 | it | SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | ERR4808988 | Pre-XDR-TB | lineage4.3.3 | za | SRR1167341 | Pre-XDR-TB | lineage4.3.3 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | ERR473327 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173354 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350414 | Pre-XDR-TB | lineage4.3.3 | za | ERR11488368 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488703 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR8758885 | Pre-XDR-TB | lineage4.3.3 | None | SRR847783 | Pre-XDR-TB | lineage4.3.3 | za | ERR11773739 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773709 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773725 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773752 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393332 | MDR-TB | lineage4.3.4.1 | None | ERR11773705 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773740 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510321 | Pre-XDR-TB | lineage2.2.1 | pk | ERR2510361 | Pre-XDR-TB | lineage2.2.1 | pk | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | SAMN02403569 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586073 | Pre-XDR-TB | lineage4.3.3 | za | SRR1011474 | Pre-XDR-TB | lineage4.3.3 | None | ERR7361989 | Pre-XDR-TB | lineage4.3.3 | None | SRR10868972 | MDR-TB | lineage4.3.3 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SAMN01925615 | Pre-XDR-TB | lineage4.3.3 | None | ERR9993123 | XDR-TB | lineage4.3.3 | None | SAMN02053781 | MDR-TB | lineage4.3.3 | za | SAMN01925639 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173101 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586068 | Pre-XDR-TB | lineage4.3.3 | za | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR8975080 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180330 | Pre-XDR-TB | lineage4.3.3 | None | SRR6981952 | MDR-TB | lineage4.3.3 | None | SRR847778 | Pre-XDR-TB | lineage4.3.3 | za | SRR26397810 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR1011471 | Pre-XDR-TB | lineage4.3.3 | None | ERR9993040 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173391 | Pre-XDR-TB | lineage4.3.3 | None | SRR924220 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1196515 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806996 | Pre-XDR-TB | lineage4.3.3 | None | ERR552479 | MDR-TB | lineage2.2.1 | None | SRR1180433 | Pre-XDR-TB | lineage4.3.3 | None | SRR14782129 | MDR-TB | lineage4.2.1 | None | ERR11488702 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925667 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350413 | Pre-XDR-TB | lineage4.3.3 | za | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173448 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181349 | Sensitive | lineage4 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR11349167 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925661 | Pre-XDR-TB | lineage4.3.3 | None | SRR23339947 | MDR-TB | lineage4.3.3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR7361977 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925659 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350430 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586041 | Pre-XDR-TB | lineage4.3.3 | za | ERR4808975 | Pre-XDR-TB | lineage4.3.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR1173024 | Sensitive | lineage4.3.3 | None | SRR1184366 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925618 | Pre-XDR-TB | lineage4.3.3 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR23340085 | MDR-TB | lineage4.3.3 | None | SRR1180369 | Pre-XDR-TB | lineage4.3.3 | None | SRR924208 | Pre-XDR-TB | lineage4.3.3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | ERR5918042 | XDR-TB | lineage4.3.3 | za | SAMN02586079 | Pre-XDR-TB | lineage4.3.3 | za | ERR9992871 | XDR-TB | lineage4.3.3 | None | SRR15901694 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181220 | Pre-XDR-TB | lineage4.3.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR4830506 | Pre-XDR-TB | lineage4.3.3 | za | ERR4828787 | Pre-XDR-TB | lineage2.2.1 | None | SRR847776 | Pre-XDR-TB | lineage4.3.3 | za | SRR833078 | Pre-XDR-TB | lineage4.3.3 | za | ERR4828910 | MDR-TB | lineage4.8 | None | SRR1165660 | Pre-XDR-TB | lineage4.3.3 | None | SRR924212 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062839 | Pre-XDR-TB | lineage4.3.3 | None | SRR924697 | Pre-XDR-TB | lineage4.3.3 | None | SRR924214 | Pre-XDR-TB | lineage4.3.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1011456 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350425 | Pre-XDR-TB | lineage4.3.3 | za | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | ERR1193881 | Pre-XDR-TB | lineage4.3.3 | za | SRR10315684 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350431 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586090 | Pre-XDR-TB | lineage4.3.3 | za | SRR847792 | Pre-XDR-TB | lineage4.3.3 | za | ERR8025485 | Pre-XDR-TB | lineage4.3.3 | None | SRR847785 | Pre-XDR-TB | lineage4.3.3 | za | ERR9806902 | Pre-XDR-TB | lineage4.3.3 | None | SRR1144815 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062825 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02053807 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025486 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488942 | Pre-XDR-TB | lineage4.3.3 | None | ERR11465081 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184331 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510849 | Pre-XDR-TB | lineage2.2.1 | it | SAMN02586070 | Pre-XDR-TB | lineage4.3.3 | za | ERR552478 | MDR-TB | lineage2.2.1 | None | SRR847777 | Pre-XDR-TB | lineage4.3.3 | za | SRR1172918 | Other | lineage4.3.3 | None | SRR1184333 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181243 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR924692 | Pre-XDR-TB | lineage4.3.3 | None | SRR833033 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971123 | Pre-XDR-TB | lineage4.3.3 | None | ERR4799775 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR9971230 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806993 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1196576 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830515 | Pre-XDR-TB | lineage4.3.3 | za | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR833137 | MDR-TB | lineage4.3.3 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11488367 | Pre-XDR-TB | lineage4.3.3 | None | ERR11043123 | MDR-TB | lineage2.2.1 | None | SRR1173154 | MDR-TB | lineage4.3.3;lineage4.4.1.1.1 | None | SRR1167293 | MDR-TB | lineage4.4.1.1.1 | None | SRR1181138 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025683 | Pre-XDR-TB | lineage4.3.3 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SAMN01925666 | Pre-XDR-TB | lineage4.3.3 | None | ERR4831550 | Pre-XDR-TB | lineage4.3.3 | None | SRR847788 | Pre-XDR-TB | lineage4.3.3 | za | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR1180233 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR847801 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173200 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181174 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975605 | MDR-TB | lineage4.3.3 | None | ERR11773708 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773727 | Pre-XDR-TB | lineage4.3.3 | None | SRR28498400 | Pre-XDR-TB | lineage4.2.1 | None | ERR4831509 | Pre-XDR-TB | lineage2.2.1 | pk | ERR13286214 | Pre-XDR-TB | lineage4.3.3 | None | ERR13288794 | Pre-XDR-TB | lineage4.3.3 | None | ERR13288915 | MDR-TB | lineage4.3.3 | None | ERR13289280 | Pre-XDR-TB | lineage4.3.3 | None | ERR13289393 | Pre-XDR-TB | lineage4.3.3 | None | ERR13286170 | Pre-XDR-TB | lineage4.3.3 | None | ERR13286201 | Pre-XDR-TB | lineage2.2.2;lineage4.3.3 | None | ERR13288743 | Pre-XDR-TB | lineage4.3.3 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR1165674 | Pre-XDR-TB | lineage2;lineage4.3.3 | None | SRR1169271 | Pre-XDR-TB | lineage4.3.3 | None | ERR13286202 | Pre-XDR-TB | lineage4.3.3 | None | ERR1873435 | Pre-XDR-TB | lineage4.3.3 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR9971228 | Pre-XDR-TB | lineage4.3.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SAMEA2534676 | MDR-TB | lineage2.2.1 | kz | SAMN02053748 | Pre-XDR-TB | lineage4.3.3;lineage4.4.1.1 | None | SAMN02053766 | Pre-XDR-TB | lineage4.3.3 | za | SRR21576680 | Pre-XDR-TB | lineage4.5 | None | SRR7781513 | Pre-XDR-TB | lineage2.2.1 | None | SRR847794 | Pre-XDR-TB | lineage4.3.3 | za | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4830557 | Pre-XDR-TB | lineage4.3.3 | None | ERR7362014 | Pre-XDR-TB | lineage4.3.3 | None | SRR924231 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055619 | MDR-TB | lineage4.3.3 | None | SRR833064 | Pre-XDR-TB | lineage4.3.3 | None | SRR847793 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR9971040 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971315 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196477 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181357 | Pre-XDR-TB | lineage4.3.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR1173789 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | SRR9970994 | Pre-XDR-TB | lineage4.3.3 | None | SRR832996 | Pre-XDR-TB | lineage4.3.3 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | SRR1173039 | Pre-XDR-TB | lineage4.3.3 | None | ERR552049 | MDR-TB | lineage4.3.3 | None | SRR1184297 | Pre-XDR-TB | lineage4.3.3 | None | ERR5918119 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350411 | Pre-XDR-TB | lineage4.3.3 | za | SRR11349177 | Pre-XDR-TB | lineage4.3.3 | None | SRR15901693 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1011462 | Pre-XDR-TB | lineage4.3.3 | None | SRR924232 | Pre-XDR-TB | lineage4.3.3 | None | SRR924225 | Pre-XDR-TB | lineage4.3.3 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR847800 | Pre-XDR-TB | lineage4.3.3 | za | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4831575 | Pre-XDR-TB | lineage4.3.3 | None | ERR4808877 | Pre-XDR-TB | lineage4.3.3 | za | SRR1011468 | Pre-XDR-TB | lineage4.3.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR7361975 | Pre-XDR-TB | lineage4.3.3 | None | ERR1034984 | Pre-XDR-TB | lineage4.3.3 | za | ERR9992908 | XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR1172323 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975018 | XDR-TB | lineage4.3.3 | None | ERR2510693 | Pre-XDR-TB | lineage2.2.1 | it | SRR1165723 | Pre-XDR-TB | lineage4.3.3 | None | ERR7737634 | Pre-XDR-TB | lineage4.3.3 | None | SRR1011455 | Pre-XDR-TB | lineage4.3.3 | None | ERR11080930 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992999 | XDR-TB | lineage4.3.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SAMN02586087 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586084 | Pre-XDR-TB | lineage4.3.3 | za | SRR924213 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971375 | Pre-XDR-TB | lineage4.3.3 | None | SRR1011454 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488574 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488704 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173180 | Pre-XDR-TB | lineage4.3.3 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9806901 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315686 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925653 | Pre-XDR-TB | lineage4.3.3 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1181391 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175325 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586065 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350416 | Pre-XDR-TB | lineage4.3.3 | za | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR2515175 | Pre-XDR-TB | lineage4.3.3 | za | SRR1173560 | Pre-XDR-TB | lineage4.3.3 | None | ERR7361962 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925641 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971243 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062842 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173780 | Pre-XDR-TB | lineage4.3.3 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SAMN02586074 | Pre-XDR-TB | lineage4.3.3 | None | SRR1183043 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172793 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062846 | Pre-XDR-TB | lineage4.3.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11043156 | MDR-TB | lineage4.8 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992791 | XDR-TB | lineage4.3.3 | None | SRR1196504 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184301 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992915 | XDR-TB | lineage4.3.3 | None | ERR4830469 | Pre-XDR-TB | lineage4.3.3 | za | SRR3055713 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173142 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180301 | Pre-XDR-TB | lineage4.3.3 | None | SRR833077 | Pre-XDR-TB | lineage4.3.3 | za | SRR3085252 | Pre-XDR-TB | lineage2.2.1 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR1180388 | Pre-XDR-TB | lineage4.3.3 | None | ERR10610221 | MDR-TB | lineage4.3.3 | None | ERR10610199 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806959 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971303 | Pre-XDR-TB | lineage4.3.3 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR3743500 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970987 | Pre-XDR-TB | lineage4.3.3 | None | SRR924206 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350429 | Pre-XDR-TB | lineage4.3.3 | za | SRR1184300 | XDR-TB | lineage4.3.3 | None | ERR2510694 | Pre-XDR-TB | lineage2.2.1 | it | ERR7361984 | Pre-XDR-TB | lineage4.3.3 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR832991 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992615 | XDR-TB | lineage4.3.3 | None | SAMN02585981 | Pre-XDR-TB | lineage4.3.3 | za | SRR924226 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925638 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR1011470 | Pre-XDR-TB | lineage4.3.3 | None | SRR7240492 | MDR-TB | La1.7.1 | None | SRR1196503 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SAMN02586069 | Pre-XDR-TB | lineage4.3.3 | za | SRR1196511 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173276 | XDR-TB | lineage4.3.3 | None | SRR924234 | Pre-XDR-TB | lineage4.3.3 | None | SRR833029 | Pre-XDR-TB | lineage4.3.3 | None | SRR924216 | Pre-XDR-TB | lineage4.3.3 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR11773750 | Pre-XDR-TB | lineage4.3.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR8975004 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181290 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971332 | Pre-XDR-TB | lineage4.3.3 | None | ERR4809290 | Pre-XDR-TB | lineage4.3.3 | za | ERR8975982 | XDR-TB | lineage4.3.3 | None | SRR1172254 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172869 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173795 | Pre-XDR-TB | lineage4.3.3 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR551452 | Pre-XDR-TB | lineage4.3.3 | None | SRR1011472 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062835 | Pre-XDR-TB | lineage4.3.3 | None | SRR9970995 | XDR-TB | lineage4.3.3 | None | SRR1181376 | Pre-XDR-TB | lineage4.3.3 | None | SRR5153930 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515319 | Pre-XDR-TB | lineage4.3.3 | za | ERR13288988 | MDR-TB | lineage4.3.3 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9993119 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350412 | Pre-XDR-TB | lineage4.3.3 | za | SRR1173370 | MDR-TB | lineage4.3.3 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR847787 | Pre-XDR-TB | lineage4.3.3 | za | ERR7361978 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586076 | Pre-XDR-TB | lineage4.3.3 | za | SAMN01925658 | Pre-XDR-TB | lineage4.3.3 | None | SRR924223 | Pre-XDR-TB | lineage4.3.3 | None | ERR9993074 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971187 | Pre-XDR-TB | lineage4.3.3 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR040123 | MDR-TB | lineage3.1.2.1 | ug | SRR1167185 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992673 | MDR-TB | lineage4.3.3 | None | SAMN01828243 | Pre-XDR-TB | lineage4.3.3 | za | SRR1184382 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184378 | Pre-XDR-TB | lineage4.3.3 | None | SRR1011466 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169191 | Pre-XDR-TB | lineage4.3.3 | None | SRR924205 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315655 | Pre-XDR-TB | lineage4.3.3 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SAMN02350427 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02403467 | Pre-XDR-TB | lineage4.3.3 | za | ERR8975819 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315604 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02403568 | Pre-XDR-TB | lineage4.3.3 | za | SRR10315625 | Pre-XDR-TB | lineage4.3.3 | None | ERR2515682 | Pre-XDR-TB | lineage4.3.3 | za | SRR1011453 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025610 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1165225 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062822 | Pre-XDR-TB | lineage4.3.3 | None | SRR1167350 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196530 | Pre-XDR-TB | lineage4.3.3 | None | SRR847791 | Pre-XDR-TB | lineage4.3.3 | za | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SAMN01925614 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975821 | XDR-TB | lineage4.3.3 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173518 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | ERR7737731 | MDR-TB | lineage4.3.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR7911566 | Pre-XDR-TB | lineage4.3.3 | za | SRR1173449 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR13290805 | Pre-XDR-TB | lineage4.5 | None | ERR2515754 | Pre-XDR-TB | lineage4.3.3 | za | SRR1011463 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350422 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02585959 | Pre-XDR-TB | lineage4.3.3 | za | SRR1173349 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488483 | Pre-XDR-TB | lineage4.3.3 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1062834 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196542 | XDR-TB | lineage4.3.3 | None | SRR833105 | Pre-XDR-TB | lineage4.3.3 | za | SRR833023 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830554 | Pre-XDR-TB | lineage4.3.3 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11488533 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02403621 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586018 | Pre-XDR-TB | lineage4.3.3 | za | ERR4828779 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515622 | Pre-XDR-TB | lineage4.3.2.1;lineage4.3.3 | za | ERR4810624 | MDR-TB | lineage2.2 | None | SRR1184320 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315624 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315605 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180293 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SAMN01925668 | Pre-XDR-TB | lineage4.3.3 | None | SRR924693 | Pre-XDR-TB | lineage4.3.3;lineage4.4.1.1 | None | ERR8975515 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586081 | Pre-XDR-TB | lineage4.3.3 | za | SRR12708401 | MDR-TB | lineage4.3.2.1 | None | SAMN02350433 | Pre-XDR-TB | lineage4.3.3 | za | SRR1165698 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925651 | Pre-XDR-TB | lineage4.3.3 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR1180379 | Pre-XDR-TB | lineage4.3.3 | None | SRR833059 | Pre-XDR-TB | lineage4.3.3 | za | SRR833173 | Pre-XDR-TB | lineage4.3.3 | za | ERR4830524 | Pre-XDR-TB | lineage4.3.3 | za | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1062823 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR924215 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992614 | Pre-XDR-TB | lineage4.3.3 | None | ERR7911627 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | za | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR10315627 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196510 | Pre-XDR-TB | lineage4.3.3 | None | SRR833130 | Pre-XDR-TB | lineage4.3.3 | None | SRR9970997 | Pre-XDR-TB | lineage4.3.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR4831538 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SAMN02586104 | Pre-XDR-TB | lineage4.3.3 | za | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SAMN02053760 | Pre-XDR-TB | lineage4.3.3 | za | SRR14781842 | HR-TB | lineage2.2.1 | None | SAMN02586066 | Pre-XDR-TB | lineage4.3.3 | za | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SAMN01925654 | Pre-XDR-TB | lineage4.3.3 | None | ERR7737921 | MDR-TB | lineage4.3.3 | None | SRR1165629 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02350426 | Pre-XDR-TB | lineage4.3.3 | za | SAMN01925670 | Pre-XDR-TB | lineage4.3.3 | None | SRR25389476 | HR-TB | lineage2.2.1 | None | SRR6855822 | Pre-XDR-TB | lineage4.3.2.1;lineage4.3.3 | None | SRR1011452 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1175081 | MDR-TB | lineage4.3.3 | None | SAMN01925617 | Pre-XDR-TB | lineage4.3.3 | None | SAMN01925636 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971166 | XDR-TB | lineage4.3.3 | None | SRR1062828 | Pre-XDR-TB | lineage4.3.3 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9992957 | XDR-TB | lineage4.3.3 | None | SAMN02053773 | Pre-XDR-TB | lineage4.3.3 | za | SAMN01925663 | Pre-XDR-TB | lineage4.3.3 | za | SRR1019171 | Pre-XDR-TB | lineage4.3.3 | None | ERR7361964 | Pre-XDR-TB | lineage4.3.3 | None |
|---|
