Rv3596c - c.1224T>G
Drug resistance types
59 Sensitive
7 RR-TB
129 HR-TB
15 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
103 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3;lineage2.1 | 1 |
| 105 | |
| lineage4.3 | 1 |
| lineage4.9 | 53 |
| lineage4.1.2.1 | 16 |
| lineage4.3.4.2.1 | 2 |
| lineage4 | 15 |
| lineage4.8 | 6 |
| lineage3 | 46 |
| lineage4.5 | 3 |
| lineage4.1.1.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2 | 2 |
| lineage4;lineage1.1.2 | 1 |
| La1.8.1 | 3 |
| lineage2.2.1 | 20 |
| lineage4;lineage1.1 | 1 |
| lineage4.7 | 2 |
| lineage4;lineage3 | 3 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| La2 | 1 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| lineage6.1.1 | 2 |
| lineage4.9;lineage3 | 1 |
| lineage4.5;lineage3 | 1 |
| La1.3 | 1 |
| lineage2 | 2 |
| lineage3.1.2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.3.3 | 2 |
| lineage4.6.1.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1 | 2 |
| lineage4.1.1 | 2 |
| lineage4.6.2.2 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6 | 1 |
| La3 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 315 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR553100 | Sensitive | lineage3 | de | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | ERR212123 | Other | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675572 | Other | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816470 | Other | lineage3 | None | ERR4817121 | Sensitive | lineage3 | None | ERR4817149 | Sensitive | lineage3 | gb | ERR4816561 | Sensitive | lineage3 | gb | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817800 | Other | lineage3 | gb | ERR4818929 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.8.1 | None | ERR2512390 | Sensitive | lineage3 | gb | ERR2513212 | Sensitive | lineage3 | gb | ERR245716 | Sensitive | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2514297 | Sensitive | lineage3 | gb | ERR2509673 | Other | lineage2.2.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5007188 | Other | lineage4 | None | ERR2514043 | Sensitive | lineage3 | gb | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4818615 | Other | None | ERR4819280 | Sensitive | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341456 | Other | None | SRR5341330 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5341470 | HR-TB | None | ERR266609 | Sensitive | lineage4;lineage3 | None | ERR2693239 | HR-TB | None | SRR6046099 | Sensitive | lineage3 | gb | ERR266554 | Sensitive | lineage3 | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | ERR323036 | HR-TB | None | ERR278594 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR484739 | Sensitive | lineage3 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6789626 | Other | None | SRR6964605 | Other | lineage3 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR294248 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496471 | Sensitive | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323043 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | None | ERR114454 | Sensitive | lineage3 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445504 | HR-TB | None | ERR330724 | Sensitive | lineage3 | None | ERR351877 | Sensitive | lineage3 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797071 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR387051 | HR-TB | None | ERR386809 | Sensitive | lineage3 | None | ERR403410 | Sensitive | lineage4.9;lineage3 | None | ERR403415 | Sensitive | lineage4;lineage3 | None | ERR4596902 | HR-TB | lineage3 | None | ERR403411 | Sensitive | lineage4.5;lineage3 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4195479 | Sensitive | lineage3 | None | ERR4187734 | Other | La1.8.1 | None | ERR4195794 | Sensitive | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769450 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4769551 | Other | La1.3 | None | ERR4798262 | HR-TB | La1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798645 | Sensitive | lineage3 | in | ERR4798823 | HR-TB | lineage4 | None | ERR11049861 | Other | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5336148 | Other | None | ERR4800341 | Other | lineage3 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR702406 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR8976043 | HR-TB | None | ERR736848 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9117709 | HR-TB | None | ERR9786077 | Sensitive | lineage3 | None | ERR9125829 | Other | lineage3 | None | ERR9121160 | Sensitive | lineage3 | None | ERR9121393 | Sensitive | lineage3 | None | ERR9786604 | Other | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1172310 | HR-TB | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861305 | Other | lineage4.9 | None | SRR13837566 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13837630 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR16057939 | Other | lineage3 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18213810 | Sensitive | lineage3 | None | SRR19303884 | HR-TB | None | SRR2100303 | Sensitive | lineage3 | None | SRR2100770 | Sensitive | lineage3 | None | ERR11067894 | Other | lineage3 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR2100815 | Sensitive | lineage4;lineage3 | None | SRR2101162 | Sensitive | lineage3 | None | SRR2101215 | Sensitive | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11082137 | Sensitive | lineage3 | None | ERR11068014 | MDR-TB | lineage3 | None | ERR11082986 | Sensitive | lineage3 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4814367 | Sensitive | lineage3 | gb | ERR176751 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None |
|---|
