Run ID: ERR4816561
Sample name:
Date: 20-10-2023 08:08:11
Number of reads: 1415910
Percentage reads mapped: 98.23
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777820 | c.661C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.41 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247426 | p.Gly305Cys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |