Rv0005 - c.1441C>T
Drug resistance types
19 Sensitive
10 RR-TB
52 HR-TB
26 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 2 |
| lineage4.9 | 65 |
| La1.7 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage1.1.3.1 | 8 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La3;lineage4.9 | 4 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 5 |
| lineage4.3.4.1 | 1 |
| La1.7;lineage4.9 | 12 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4 | 1 |
| lineage4.5 | 1 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.2 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La2;lineage2.2 | 1 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6046594 | Other | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR4831043 | Sensitive | lineage1.1.3.1 | np | ERR926161 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4799926 | Sensitive | lineage1.1.3.1 | in | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR6797668 | Sensitive | lineage1.1.3.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR181887 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR926160 | Other | lineage4.9 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6650233 | Sensitive | lineage1.1.3.1 | None | ERR2446566 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4829793 | Sensitive | lineage1.1.3.1 | it | SRR10809074 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4830353 | HR-TB | La1.7 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR28119777 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR3797029 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3439432 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4797810 | Sensitive | lineage1.1.3.1 | in | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR11068702 | MDR-TB | lineage1.2.1.2.1 | None | SRR6797729 | Sensitive | lineage1.1.3.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR926164 | Other | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4553779 | HR-TB | lineage1.1.3.1 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR926156 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | ERR9119669 | MDR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR926163 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None |
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