Rv0639 - c.588G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
3 RR-TB
26 HR-TB
6 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
62 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 40 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1 | 12 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 9 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1 | 4 |
| lineage4.3.4.2 | 1 |
| La3;lineage4.9 | 2 |
| 12 | |
| lineage4.6.2.2 | 2 |
| lineage3 | 2 |
| lineage4.8 | 3 |
| La3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage3.1.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage4.7 | 1 |
| La1.7;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 120 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR2446566 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR990545 | Other | lineage3 | None | SRR3675236 | Other | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR4815604 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR124636 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR926163 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR702406 | Other | lineage2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1196494 | MDR-TB | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None |
|---|
