lineage | Count |
---|---|
lineage4.1.2.1 | 11 |
lineage4 | 29 |
109 | |
lineage4.9 | 52 |
lineage2.2.1 | 15 |
lineage2.2 | 9 |
lineage1.1 | 1 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.4.1.2 | 1 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
La1 | 2 |
La1.8.1 | 2 |
La1.2 | 1 |
lineage1.1.2 | 1 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage6 | 1 |
lineage4.8 | 1 |
lineage4.4.1.1 | 1 |
lineage2.2.1.1 | 3 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
lineage4.5 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1 | 1 |
lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 261 |
ID | Drug resistance | Lineage | Country iso2 | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | ERR2660539 | Other | lineage4.9 | None | ERR2515228 | Other | lineage2.2.1 | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | ERR4821486 | Other | lineage2.2 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6045399 | Other | None | SRR6325442 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046397 | Other | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046460 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR323041 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | ERR5311090 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | ERR323039 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323045 | HR-TB | None | ERR323053 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067681 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR3283017 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR1063857 | HR-TB | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3283010 | Other | La1 | None | ERR3283028 | Other | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR387051 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798406 | HR-TB | None | ERR6358979 | Other | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6359045 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736837 | Other | lineage4.9 | None | ERR736848 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR14782405 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR8692871 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR161033 | HR-TB | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675270 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176651 | HR-TB | None | SRR3675383 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | ERR4816964 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675550 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4818929 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341418 | Other | None | ERR4819357 | Other | lineage4.9 | None | SRR5341456 | Other | None | SRR5341432 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None |
---|