Rv1630 - c.642T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
12 RR-TB
19 HR-TB
26 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| La1;lineage4.9 | 1 |
| lineage4.2.2 | 35 |
| lineage4.3.2.1 | 1 |
| lineage4.9 | 29 |
| lineage2.2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| 2 | |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.8 | 11 |
| lineage4 | 2 |
| lineage2.2.1 | 5 |
| lineage4.1.2.1 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.4.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| La1.8.1 | 1 |
| La1.4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1;lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769497 | Other | La1;lineage4.9 | None | SRR10040383 | MDR-TB | lineage4.2.2 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR2101146 | Sensitive | lineage4.2.2 | None | SRR6280330 | Sensitive | lineage4.2.2 | cn | SRR6280130 | Sensitive | lineage4.2.2 | cn | SRR6280128 | Sensitive | lineage4.2.2 | cn | SRR6824405 | MDR-TB | lineage4.2.2 | cn | SRR6824409 | MDR-TB | lineage4.2.2 | cn | SRR6045217 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR29440821 | Sensitive | lineage4.2.2 | None | SRR26111939 | HR-TB | lineage4.2.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4798823 | HR-TB | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1724009 | MDR-TB | lineage4.2.2 | cn | SRR1724011 | MDR-TB | lineage4.2.2 | cn | SRR1724010 | MDR-TB | lineage4.2.2 | cn | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR161037 | Other | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | SRR21576613 | MDR-TB | lineage4.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR10305981 | MDR-TB | lineage4.2.2 | None | SRR6153221 | Sensitive | lineage4.2.2 | ca | ERR6359070 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR22251808 | Sensitive | lineage4.2.2 | None | SRR5709904 | MDR-TB | lineage4.2.2 | th | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR21279447 | Sensitive | lineage4.2.2 | None | SRR5073711 | Sensitive | lineage4.2.2 | vn | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR11252736 | Other | lineage4.9 | None | SRR20969567 | Sensitive | lineage4.2.2 | None | ERR330708 | Sensitive | lineage4.2.2 | None | SRR20969777 | MDR-TB | lineage4.2.2 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2179670 | MDR-TB | lineage4.2.2 | cn | ERR2179828 | Sensitive | lineage4.2.2 | cn | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR5341330 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR20969452 | MDR-TB | lineage4.2.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4811494 | HR-TB | lineage4.2.2 | cn | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR27069420 | Pre-XDR-TB | lineage4.2.2 | None | ERR502940 | MDR-TB | lineage4.2.2 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4796577 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3273125 | RR-TB | lineage4.2.2 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR2179671 | MDR-TB | lineage4.2.2 | cn | SRR6046492 | Other | lineage4.9 | None | ERR2179672 | MDR-TB | lineage4.2.2 | cn | SRR1175487 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR2446566 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR16278274 | Other | La1.4 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR13290910 | MDR-TB | lineage4.2.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR26112794 | Sensitive | lineage4.2.2 | None | ERR978735 | Other | lineage4.8 | None | SRR26399243 | Sensitive | lineage2.2.1;lineage4.2.2 | None | ERR6359082 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR21711110 | Sensitive | lineage4.2.2 | None | ERR752202 | Sensitive | lineage4.2.2 | th | SRR20632814 | Sensitive | lineage4.9 | None |
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