Run ID: SRR10305981
Sample name:
Date: 02-04-2023 17:02:39
Number of reads: 5307300
Percentage reads mapped: 99.3
Strain: lineage4.2.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Cys | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289073 | p.His57Tyr | missense_variant | 0.23 | pyrazinamide |
embB | 4248003 | p.Gln497Arg | missense_variant | 0.99 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490678 | c.-105_-104insG | upstream_gene_variant | 1.0 |
fgd1 | 490687 | c.-96T>C | upstream_gene_variant | 1.0 |
fgd1 | 490689 | c.-94_-93delCCinsTG | upstream_gene_variant | 1.0 |
fgd1 | 490720 | c.-63T>G | upstream_gene_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834183 | c.642T>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339211 | p.Ala32Thr | missense_variant | 1.0 |
Rv3083 | 3449209 | p.Asp236Asn | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612469 | c.648A>G | synonymous_variant | 1.0 |
fbiA | 3640356 | c.-186_-180delGCCAACC | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408094 | p.Gly37Arg | missense_variant | 1.0 |