Rv3806c - c.612T>C
Drug resistance types
5 Sensitive
1 RR-TB
44 HR-TB
5 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
67 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.9 | 24 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1 | 7 |
| 11 | |
| lineage2.2.1 | 7 |
| La1.7;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.9 | 4 |
| lineage4.8 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage4.9 | 6 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.1.3 | 2 |
| La3 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.4.1.2 | 1 |
| lineage2.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.3 | 3 |
| lineage2.2 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 127 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR176651 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR7535086 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1172817 | Other | La3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR9786843 | Other | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | ERR234659 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1173778 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811049 | Sensitive | lineage2.2.1 | cn | ERR176779 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None |
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