Rv2477c - c.699C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
50 Sensitive
1 RR-TB
35 HR-TB
8 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
91 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 87 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage3 | 2 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1 | 10 |
| lineage4.1.3 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2.1 | 11 |
| lineage4.7 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.6.2.2 | 2 |
| lineage6.3.1 | 1 |
| 12 | |
| lineage4.9;lineage6.3 | 2 |
| lineage6 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.2 | 2 |
| lineage2.1;lineage4.9 | 7 |
| lineage2.2.1.2 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.8 | 4 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 188 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29097004 | Other | lineage3 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR29096943 | Sensitive | lineage3.1.2.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | ERR9117721 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR26159066 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR26331611 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR28119752 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | SRR5341330 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR13246255 | Sensitive | lineage4.4.2 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR7496509 | Other | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR1063896 | Sensitive | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046046 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None |
|---|
