Rv0005 - c.1312T>C


Drug resistance types
8 Sensitive 7 RR-TB 53 HR-TB 28 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 33 Other
lineage Counts
lineage Count
6
La1.6;lineage4 1
lineage3 1
lineage4.9 63
lineage2.2 1
lineage2.1;lineage4.9;lineage7 1
lineage4.2;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage4.9;lineage6.3 5
lineage2.1 1
lineage4.9;lineage7 1
lineage4.8 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage2.2.1 2
La3;M.canetti;lineage4.8;lineage4.9 1
lineage1;lineage4.9 1
La1.7;M.canetti;lineage4.9 2
lineage4 2
La1.7;lineage4.9 3
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.1.1.3 1
lineage4.6.2.2 3
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
M.canetti;lineage2.1;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 3
La1.7.1;lineage4.9 1
lineage4.4.1.2 1
lineage6.1.2 1
lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2 1
lineage4.3.4.2.1 1
La1.7.1;La1.7.X-unk4 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.3.2.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 131
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR9786671 Other None
ERR9786604 Other None
ERR9786843 Other None
ERR212001 HR-TB None
SRR28351554 Other La1.6;lineage4 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702406 Other lineage2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR23340091 MDR-TB lineage4.8 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4769521 RR-TB lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR323066 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR4819422 HR-TB lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR176651 Other lineage4.9 None
ERR373945 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2693252 HR-TB lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4820773 HR-TB lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR363506 Sensitive lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4819877 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9787030 RR-TB lineage6.1.2 None
ERR502510 HR-TB lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 MDR-TB lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR6789626 Other None
SRR28351339 MDR-TB lineage4 None
ERR4819051 Sensitive lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR387051 RR-TB lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR176778 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR4815441 HR-TB lineage4.9 None
ERR751326 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR363453 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR181824 MDR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None