Rv1221 - c.475_477delTTAinsCTG


Drug resistance types
60 Sensitive 1 RR-TB 79 HR-TB 3 MDR-TB 4 Pre-XDR-TB 2 XDR-TB 92 Other
lineage Counts
lineage Count
lineage2.1;lineage4.3.2 1
lineage4.1.2.1 4
lineage4.9 74
La3;M.canetti;lineage2.1;lineage4.9 9
M.canetti;lineage4.9 4
lineage2.2.1;lineage4 1
lineage4.1.1.2 1
La3;lineage2.2.1 1
lineage2.2.2;lineage4 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage2.1;lineage4.9 8
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage2.1 2
La1;lineage4.1.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage3.1 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
La1.7;lineage4.9;lineage7 3
lineage1.1.1 1
lineage2.1;lineage4.9;lineage6.3 5
M.canetti;lineage2.1;lineage4.9 12
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage2.2.1 10
lineage4.2;lineage4.9 2
lineage4.6.2.2 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La1.7;M.canetti;lineage4.9 3
lineage4.3.4.2.1 1
lineage2.2.1.2;lineage7 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage4 2
lineage4.6.3;lineage4.9 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
lineage3 2
lineage2.2.1;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
La1.7 1
lineage1;lineage4.9 1
La3;lineage4.9 4
9
lineage4.2;lineage4.8.1;lineage4.9 1
La1.7;lineage4.9 4
La1.7.1;lineage4.9 1
lineage4.1.1.3 1
lineage4.1.3 1
lineage4.8 3
lineage1.1.3.1 1
lineage4.4.1.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4.8;lineage4.9 2
lineage2.1;lineage4.1.1.1;lineage6.3 1
lineage4.9;lineage6.3 6
La1.7.1 1
lineage4.4.1.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.2 3
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.9;lineage6.1.3 1
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage4.3.3 1
La3;lineage4 1
La3;lineage2 1
lineage4.3.1;lineage4.9;lineage6 1
lineage2.2 1
lineage4.1.1.1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.8.1 2
lineage2.1;lineage6.3 1
La3 1
La1.2.BCG 1
M.canetti;lineage2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 241
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR9786682 Other lineage4.1.2.1 None
SRR6046046 Other lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR13285068 Sensitive lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR4769450 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR5917710 Other lineage4.1.2.1 None
ERR926161 Sensitive lineage4.9 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR971389 Sensitive lineage4.9 None
ERR702406 Other lineage2.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR1184346 HR-TB lineage3.1 None
SRR3675585 Sensitive lineage4.9 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR3797070 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR12142341 HR-TB lineage2.1 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR1180410 Sensitive lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR502511 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6045053 Other lineage4 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR6358979 Other lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4830353 Other La1.7 None
SRR5341425 Other lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR5341366 Sensitive lineage4.9 None
SRR6789626 Other None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR29096174 Sensitive La1.7;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675236 Other None
ERR3283021 HR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11466044 Other lineage4.1.1.3 None
ERR3804169 HR-TB lineage4.1.3 None
SRR1181349 Sensitive lineage4 None
ERR11049020 Other lineage4.8 None
ERR4800341 Other lineage3 None
ERR1035122 Sensitive lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117709 Other None
SRR3675441 Other lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR9970979 Sensitive lineage4.8 None
SRR5341308 Sensitive lineage4.9 None
ERR2660539 Other lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR323085 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR9971112 Other lineage2.2.1 None
SRR1184294 Other lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816151 Sensitive lineage4.8 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4024991 Other lineage4.8;lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6789621 Other lineage4.9 None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR3797079 Sensitive lineage4.9 None
ERR9786671 Other None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR1173453 Other lineage4.4.1.1 None
SRR1180312 Sensitive lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4407463 HR-TB None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR3283040 HR-TB lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
SRR3675507 Other lineage4.9 None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR3283028 Other La3;lineage4 None
SRR20969677 HR-TB La3;lineage2 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR702405 Sensitive lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4816585 Other lineage2.2 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283031 Sensitive La3;lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR124636 Sensitive lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR28119753 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR1791696 Other La1.8.1 None
SRR6511621 Sensitive lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
SRR29231425 Sensitive lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR26399265 Other lineage2.2.1 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR926154 Sensitive lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR6866639 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR28119752 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180355 Sensitive lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2693252 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR9786694 Other lineage4.1.2.1 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926157 Sensitive lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR18213713 HR-TB None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1180300 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None