Rv1854c - c.399A>G
Drug resistance types
63 Sensitive
3 RR-TB
124 HR-TB
12 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
57 Other
lineage Counts
| lineage | Count |
|---|---|
| 138 | |
| lineage4.5 | 1 |
| lineage2.2.1 | 9 |
| lineage4.1.1 | 1 |
| lineage4.1 | 2 |
| lineage4 | 59 |
| lineage4.8 | 3 |
| lineage4.4.1.1 | 2 |
| lineage2.2 | 3 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.9 | 22 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1.1 | 1 |
| lineage5.2 | 2 |
| lineage3.1 | 4 |
| La2 | 1 |
| lineage4.7 | 1 |
| La1.8.1 | 1 |
| La1.2 | 1 |
| lineage2 | 3 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.3 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 266 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | ERR9806864 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025422 | Pre-XDR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675502 | Other | None | ERR4817060 | RR-TB | None | ERR1949956 | Sensitive | lineage4.8 | None | ERR212001 | HR-TB | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3675572 | Other | None | ERR2229284 | Sensitive | lineage4.8 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR2229507 | Sensitive | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341366 | Sensitive | lineage4 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818615 | Other | None | SRR5341300 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | SRR5341387 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341308 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341302 | HR-TB | None | ERR278594 | HR-TB | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | SRR5535933 | HR-TB | None | SRR5341470 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045450 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045158 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6045399 | Other | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR323107 | Other | lineage4 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7585435 | Other | lineage4.9 | None | ERR323038 | HR-TB | None | SRR7535086 | Other | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283017 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283032 | HR-TB | None | ERR363474 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR3597006 | Sensitive | None | ERR363447 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR736867 | HR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR736874 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | HR-TB | None | SRR10809074 | Sensitive | lineage4 | None | ERR987722 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | SRR1173777 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1173778 | Other | None | SRR1175049 | RR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12416824 | HR-TB | None | SRR14782405 | HR-TB | None | SRR13837519 | Sensitive | lineage4.9 | None | SRR13837849 | Sensitive | lineage4.9 | None |
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