lineage | Count |
---|---|
97 | |
lineage4.1.2.1 | 1 |
lineage2.2.1 | 8 |
lineage4 | 14 |
lineage4.9 | 7 |
lineage4.1 | 2 |
La2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.3 | 2 |
lineage1.1.3.1 | 1 |
lineage3.1 | 2 |
lineage2 | 1 |
lineage4.5 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
La1.2 | 1 |
lineage4.1.1 | 1 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
lineage2.2 | 1 |
lineage4.8 | 1 |
lineage4.8;La3 | 1 |
lineage4;lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 147 |
ID | Drug resistance | Lineage | Country iso2 | SRR5341418 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4 | None | SRR6045519 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR502532 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR067681 | HR-TB | None | DRR473984 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR3283017 | HR-TB | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798406 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR736867 | HR-TB | None | ERR8976043 | HR-TB | None | ERR736874 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9634265 | Sensitive | None | SRR1169194 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR12416824 | HR-TB | None | SRR13861305 | Other | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961549 | Other | La1.2 | None | ERR4815604 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675486 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675387 | Sensitive | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4816999 | Other | None | SRR3675502 | Other | None | SRR3675545 | HR-TB | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3742665 | HR-TB | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675550 | Other | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR1035162 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341461 | Sensitive | lineage4 | None |
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