Rv1173 - c.1596T>G


Drug resistance types
21 Sensitive 8 RR-TB 65 HR-TB 35 MDR-TB 5 Pre-XDR-TB 1 XDR-TB 101 Other
lineage Counts
lineage Count
M.canetti;lineage4.2 1
M.canetti;lineage2.1 1
lineage2.2.1 8
lineage4.2;lineage4.9 3
lineage4.9 47
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 2
14
lineage2.2.2;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.1 3
lineage4.3.2;lineage4.9 1
lineage2.1;lineage4.9 10
lineage4.9;lineage6.3 8
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;M.canetti 1
La3;lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9 9
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage3.1.2.2 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage4.9 6
lineage2.1;lineage4.3.2 1
La3;lineage4.9 8
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;lineage1.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.6.3;lineage4.9 2
La2;lineage4.9 1
lineage1.1.2 2
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.7;lineage4.9 3
lineage4.8 2
lineage1.2.1.1 1
M.canetti;lineage4.9 3
lineage2.2.1;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1;lineage2;lineage4.9 1
lineage4.9;lineage9 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage2.1;lineage4.3.2;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La2;lineage4.9;lineage9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 2
lineage2.1;lineage4.9;lineage6.3 10
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage3.1 1
M.canetti 1
lineage5.2 2
lineage3 4
lineage4.1.2 1
La1.2.BCG;La1.8.1 1
La1.7;lineage4.9;lineage6 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La3;lineage2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage2.2.1;lineage3 1
lineage3.1.2.2 1
lineage4 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.2.1 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La1;lineage4.9 1
lineage1.1.3.1 1
La3 2
La3;lineage2.2.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 1
La1.7;M.canetti;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;lineage4.8 1
La3;M.canetti;lineage2.2.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.1.1.1 1
lineage4.2;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
spoligotype Counts
spoligotype Count
None 236
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR4800527 MDR-TB lineage2.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR1180996 Sensitive lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2514692 Other None
SRR5341387 Other lineage4.9 None
SRR25827682 Other None
SRR6789621 Other lineage4.9 None
SRR29093105 Other lineage2.2.2;lineage4 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR29096410 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1196768 MDR-TB None
ERR266125 Other La3;M.canetti None
SRR10808668 Sensitive lineage2.2.1 None
SRR29097026 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR26399973 Other La3;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR702405 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR4814734 Other lineage1.2.1.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816999 Other None
SRR29051077 Other lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6789626 Other None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR124636 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675236 Other None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR9117709 Other None
SRR14782405 HR-TB lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR29017461 Other La3;lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR779852 Sensitive lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1184346 HR-TB lineage3.1 None
ERR266124 Other M.canetti None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR26399265 Other lineage2.2.1 None
SRR1184294 Other lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR987722 MDR-TB None
SRR28119752 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
ERR2693252 Sensitive lineage4.9 None
ERR4818347 Other lineage4.1.2 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR1172951 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR323066 Sensitive lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR20969677 HR-TB La3;lineage2 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR502511 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR3797048 Other La3;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR6866410 Sensitive lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3797015 HR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7535086 Other None
SRR14802079 MDR-TB lineage4.2.1 None
SRR28119777 Other lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR4798139 RR-TB lineage1.1.2 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR1172817 Other La3 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR6045892 Sensitive lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR6359082 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
SRR1184381 MDR-TB None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR28351339 MDR-TB lineage4 None
SRR28119805 Other lineage4.9 None
ERR234659 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR21690574 Other lineage4.1.2.1 None
SRR1180226 HR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1173363 Other None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
ERR2514327 HR-TB lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3797083 RR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4815604 Other None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
ERR4798504 RR-TB lineage3 None
SRR10808399 Sensitive lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR176793 Other lineage4.1.1.1 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR4800341 Other lineage3 None
SRR1172728 RR-TB La3 None
ERR3797064 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None