Rv0676c - c.2560C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
2 RR-TB
33 HR-TB
8 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 44 |
| lineage2.2.1 | 7 |
| lineage2.1;lineage4.9 | 4 |
| lineage4.8 | 2 |
| 13 | |
| La1.7;lineage4.9 | 3 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.9;lineage6.3 | 7 |
| La1.8.1 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9;lineage9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4811311 | Other | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR28119752 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR7236177 | Other | La1.8.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR18213713 | HR-TB | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4800341 | Other | None | SRR29097058 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | SRR3675236 | Other | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR137286 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063896 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR176751 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR28119805 | Other | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None |
|---|
