Rv0676c - c.2664T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
2 RR-TB
115 HR-TB
16 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 102 |
| lineage4.9 | 32 |
| La3;lineage4.9 | 9 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| La1;lineage4.9 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.1.2 | 2 |
| lineage4.5 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| 1 | |
| La1.8.1 | 2 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.3.2 | 1 |
| La1.2 | 1 |
| lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 189 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR13260299 | HR-TB | lineage2.2.1 | None | ERR13261689 | HR-TB | lineage2.2.1 | None | ERR4813690 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR13261685 | HR-TB | lineage2.2.1 | None | ERR13260355 | HR-TB | lineage2.2.1 | None | ERR13260520 | HR-TB | lineage2.2.1 | None | ERR13260262 | HR-TB | lineage2.2.1 | None | ERR13260350 | HR-TB | lineage2.2.1 | None | ERR13261701 | HR-TB | lineage2.2.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR13260368 | HR-TB | lineage2.2.1 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR13260296 | HR-TB | lineage2.2.1 | None | ERR13260367 | HR-TB | lineage2.2.1 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR13260338 | HR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR13260331 | HR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR13260359 | HR-TB | lineage2.2.1 | None | ERR13260370 | HR-TB | lineage2.2.1 | None | ERR13260289 | HR-TB | lineage2.2.1 | None | ERR13260320 | HR-TB | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR29231425 | Sensitive | lineage4.9 | None | ERR13260606 | HR-TB | lineage2.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR13260325 | HR-TB | lineage2.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR13260627 | HR-TB | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | ERR13260358 | HR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260618 | HR-TB | lineage2.2.1 | None | SRR3675246 | Other | lineage4.9 | None | ERR13260273 | HR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR13260261 | HR-TB | lineage2.2.1 | None | ERR13260629 | HR-TB | lineage2.2.1 | None | ERR13260353 | MDR-TB | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR18500602 | Sensitive | lineage4.5 | None | ERR13260608 | HR-TB | lineage2.2.1 | None | ERR4813080 | HR-TB | lineage2.2.1 | pe | ERR4813310 | HR-TB | lineage2.2.1 | pe | ERR4813652 | HR-TB | lineage2.2.1 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | ERR13260255 | HR-TB | lineage2.2.1 | None | ERR13260583 | HR-TB | lineage2.2.1 | None | ERR13261700 | HR-TB | lineage2.2.1 | None | ERR13260333 | HR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR13260323 | MDR-TB | lineage2.2.1 | None | ERR13260349 | HR-TB | lineage2.2.1;lineage4 | None | ERR3797029 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1063896 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR13260377 | HR-TB | lineage2.2.1 | None | ERR13260217 | HR-TB | lineage2.2.1 | None | ERR13260383 | HR-TB | lineage2.2.1 | None | ERR13260346 | HR-TB | lineage2.2.1 | None | ERR13260372 | HR-TB | lineage2.2.1 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR13260336 | HR-TB | lineage2.2.1 | None | ERR13260307 | HR-TB | lineage2.2.1 | None | ERR13260384 | HR-TB | lineage2.2.1 | None | ERR13260309 | HR-TB | lineage2.2.1 | None | ERR13260586 | HR-TB | lineage2.2.1 | None | ERR13260605 | HR-TB | lineage2.2.1 | None | ERR13260609 | HR-TB | lineage2.2.1 | None | ERR13260363 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR13261655 | HR-TB | lineage2.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR13260361 | HR-TB | lineage2.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR13261869 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR13260506 | MDR-TB | lineage2.2.1 | None | ERR13260300 | HR-TB | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR13260328 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR13260264 | HR-TB | lineage2.2.1 | None | ERR13260297 | HR-TB | lineage2.2.1 | None | ERR13260263 | HR-TB | lineage2.2.1 | None | ERR13260549 | HR-TB | lineage2.2.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR13261691 | HR-TB | lineage2.2.1 | None | ERR13260292 | HR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR13260507 | HR-TB | lineage2.2.1 | None | ERR13260600 | HR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR13260216 | HR-TB | lineage2.2.1 | None | ERR13260332 | HR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR13260347 | HR-TB | lineage2.2.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR13260351 | HR-TB | lineage2.2.1 | None | ERR13261674 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4813665 | HR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4812808 | HR-TB | lineage2.2.1 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR13260382 | HR-TB | lineage2.2.1 | None | ERR4813669 | HR-TB | lineage2.2.1 | None | ERR13260275 | MDR-TB | lineage2.2.1 | None | ERR13260324 | HR-TB | lineage2.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR13260360 | HR-TB | lineage2.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR6358979 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR13260620 | HR-TB | lineage2.2.1 | None | ERR13260274 | HR-TB | lineage2.2.1 | None | ERR4813631 | HR-TB | lineage2.2.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR13260251 | HR-TB | lineage2.2.1 | None | ERR13260327 | HR-TB | lineage2.2.1 | None | ERR13260283 | HR-TB | lineage2.2.1 | None | ERR13261870 | HR-TB | lineage2.2.1 | None | ERR13260514 | HR-TB | lineage2.2.1 | None | ERR13260622 | HR-TB | lineage2.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR13261690 | HR-TB | lineage2.2.1 | None | ERR13260285 | HR-TB | lineage2.2.1 | None | ERR13260582 | HR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR13260657 | MDR-TB | lineage2.2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR29096873 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR13260612 | HR-TB | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR13260369 | HR-TB | lineage2.2.1 | None | ERR13260268 | HR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR13260326 | HR-TB | lineage2.2.1 | None | ERR13260311 | HR-TB | lineage2.2.1;lineage4.3.2 | None | SRR23961549 | Other | La1.2 | None | ERR13260584 | HR-TB | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4813428 | HR-TB | lineage2.2.1 | pe | SRR28351339 | MDR-TB | lineage4 | None | ERR4813045 | HR-TB | lineage2.2.1 | pe | SRR19295647 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR13260601 | HR-TB | lineage2.2.1 | None | ERR4813593 | HR-TB | lineage2.2.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR13261672 | HR-TB | lineage2.2.1 | None |
|---|
