Rv0676c - c.2664T>C
Drug resistance types
4 Sensitive
4 RR-TB
45 HR-TB
19 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.9 | 28 |
| lineage2.2 | 3 |
| 1 | |
| lineage2.2.1 | 19 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;lineage4.9 | 9 |
| La2;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage1.1.2 | 1 |
| La1;lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;lineage4 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La1.2 | 1 |
| lineage4.1.2 | 1 |
| La1.8.1 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | SRR18500602 | Sensitive | lineage4.5 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR1063896 | HR-TB | None | ERR13260620 | HR-TB | lineage2.2.1 | None | ERR13260622 | HR-TB | lineage2.2.1 | None | ERR13260629 | HR-TB | lineage2.2.1 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4813669 | HR-TB | lineage2.2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4813652 | HR-TB | lineage2.2.1 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR4813665 | HR-TB | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR13260601 | HR-TB | lineage2.2.1 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR4813080 | HR-TB | lineage2.2.1 | pe | ERR4813593 | HR-TB | lineage2.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4813631 | HR-TB | lineage2.2.1 | None | ERR4813690 | HR-TB | lineage2.2.1 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR4813045 | HR-TB | lineage2.2.1 | pe | ERR323107 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR4813428 | HR-TB | lineage2.2.1 | pe | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR3283028 | Other | La3;lineage4 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR23961549 | Other | La1.2 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4812808 | HR-TB | lineage2.2.1 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | SRR7236177 | Other | La1.8.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR4813310 | HR-TB | lineage2.2.1 | pe | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None |
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