lineage | Count |
---|---|
lineage2.2.1 | 9 |
lineage4.9 | 41 |
lineage4 | 58 |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 2 |
43 | |
lineage7;lineage2.2.1.2 | 1 |
La1.8.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage1.2.1.1 | 1 |
lineage4;lineage2 | 1 |
lineage3 | 1 |
lineage1.1.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.9.1 | 1 |
lineage4.1 | 1 |
lineage4.1.2 | 1 |
lineage4.8 | 1 |
lineage4.3.2.1 | 1 |
lineage4.3.3 | 1 |
La1.2 | 1 |
La1.3 | 1 |
lineage4.5 | 1 |
lineage1.1.3.1 | 1 |
spoligotype | Count |
---|---|
None | 173 |
ID | Drug resistance | Lineage | Country iso2 | SRR10315567 | Other | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR14782405 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR8692899 | Other | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675222 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675501 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675387 | Sensitive | None | ERR4815815 | Sensitive | lineage4 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR5341387 | Other | lineage4 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341425 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341330 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5535933 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046046 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046299 | HR-TB | None | ERR4830353 | Other | None | SRR6511621 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046492 | Other | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | ERR502510 | Sensitive | lineage4 | None | ERR502943 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323085 | Sensitive | lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR4024991 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769514 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4811493 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR752229 | Other | lineage4.5 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None |
---|