lineage | Count |
---|---|
La1.8.1 | 3 |
86 | |
lineage2.2.1 | 16 |
lineage2.2 | 7 |
lineage4.2;La1.7 | 1 |
lineage4.1 | 2 |
lineage4.9 | 50 |
lineage3;lineage2.1 | 1 |
lineage4 | 87 |
lineage2.1 | 2 |
lineage4.1;lineage1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.1.1 | 1 |
lineage5.1.4 | 1 |
lineage3 | 5 |
lineage4.2.1 | 2 |
lineage4.6.2.2 | 1 |
lineage1.1.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.1.2.1 | 10 |
lineage3.1 | 2 |
lineage1.1 | 1 |
lineage2.2.1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.8 | 1 |
lineage4.3.2.1 | 1 |
La1 | 2 |
La1.3 | 1 |
La1.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4.5 | 2 |
lineage4.3.2 | 1 |
lineage6.1.3 | 1 |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage2 | 1 |
spoligotype | Count |
---|---|
None | 302 |
ID | Drug resistance | Lineage | Country iso2 | SRR1791696 | Other | La1.8.1 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675477 | Other | lineage4.9 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675387 | Sensitive | None | SRR3675229 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675270 | HR-TB | None | SRR3675383 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675522 | Other | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR3275220 | Other | lineage3 | nl | ERR2512770 | Other | lineage4.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341425 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341300 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517475 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693239 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045233 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045320 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046460 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | None | ERR5311081 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323063 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1035122 | Sensitive | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769555 | Other | La1.3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6358837 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR10808399 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR13837637 | Sensitive | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181390 | Sensitive | lineage2 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861428 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None |
---|