lineage | Count |
---|---|
73 | |
lineage4 | 60 |
La1 | 2 |
lineage4.9 | 12 |
La1.8.1 | 1 |
lineage4;lineage3.1 | 1 |
lineage2.2 | 3 |
lineage2.2.1 | 8 |
lineage4.3.4 | 1 |
lineage4.3.2.1 | 1 |
La3 | 1 |
lineage2.2.1.1 | 5 |
La1.7.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.3.4.2.1 | 2 |
lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.1.2 | 2 |
lineage4.2.1.1 | 1 |
lineage4.1.1.3 | 2 |
lineage4.4.1.2 | 1 |
spoligotype | Count |
---|---|
None | 183 |
ID | Drug resistance | Lineage | Country iso2 | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283047 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473332 | Other | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4769521 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | SRR1173568 | Other | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9119669 | HR-TB | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1173777 | Other | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR176778 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176751 | HR-TB | None | ERR176779 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR158583 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675222 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675488 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675502 | Other | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | SRR3675510 | Other | None | ERR212123 | Other | None | ERR212033 | HR-TB | None | ERR212121 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4817552 | Sensitive | lineage2.2.1.1 | None | ERR4819051 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4821705 | Sensitive | None | SRR5341469 | Other | lineage4 | None | SRR6045519 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046460 | HR-TB | None | SRR6046225 | HR-TB | None | ERR4830353 | Other | None | SRR6046362 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6511621 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR502889 | Other | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR323045 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR067681 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063858 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None |
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