Rv0006 - c.540C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
75 Sensitive
2 RR-TB
31 HR-TB
8 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 89 |
| La3;lineage4.9 | 7 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.1.1 | 8 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1 | 11 |
| lineage5.2 | 2 |
| lineage4 | 1 |
| lineage3 | 4 |
| lineage4.8 | 2 |
| La1.8.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| 2 | |
| lineage1.1.2 | 2 |
| lineage4.5 | 1 |
| La2;lineage2.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.6.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.9;lineage7 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.1.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR29051114 | Sensitive | lineage1.1.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | SRR30182716 | Sensitive | lineage1.1.1.1 | None | SRR29096530 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR21690066 | Sensitive | lineage3 | None | ERR4812155 | Other | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7240033 | Other | La1.8.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR26399366 | Sensitive | lineage1.1.1.1 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR10808730 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR22249967 | Sensitive | lineage1.1.2 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR22251859 | Sensitive | lineage1.1.1.1 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR11252736 | Other | lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR11466061 | Sensitive | lineage4.9.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR29097004 | Other | lineage3 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR29096897 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR26399804 | Sensitive | lineage1.1.1.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341467 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR2843446 | Sensitive | lineage1.1.1.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4828341 | Sensitive | lineage1.1.1.1 | vn | ERR4796254 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR7339146 | Sensitive | lineage1.1.1.1 | None | ERR1063896 | Sensitive | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None |
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