Rv0005 - c.1338T>C


Drug resistance types
13 Sensitive 6 RR-TB 73 HR-TB 22 MDR-TB 0 Pre-XDR-TB 0 XDR-TB 74 Other
lineage Counts
lineage Count
lineage4.9 83
lineage4 4
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.2.1 2
La1;lineage4.1.2 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1;lineage4.9 1
lineage4.4.1.2 1
lineage4.1.2.1 4
lineage6.1.2 1
lineage2.1;lineage4.9 5
7
La1.7;lineage4.9 4
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
lineage1.2.2.2 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.2 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.9;lineage6.3 3
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage2.1;lineage4.9;lineage6.3 6
lineage4.1.3 2
lineage4.6.2.2 3
lineage1;lineage4.9 1
lineage2.1;lineage4.1.4;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 2
M.canetti;lineage4.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.1.1.1 1
La3;lineage2.1;lineage6.3 1
lineage4.3.4 1
lineage2.2.2 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.2.2 1
M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage6.3 1
lineage4.1.2 1
lineage2.1 1
La1.7;M.canetti;lineage4.9 3
La3;lineage4.3.4 1
La1.7.1;La1.7.X-unk4 1
lineage4.3.2.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La3;lineage4.9 2
La1.7.1;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.1.1.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.6;lineage4 1
lineage4.8 1
lineage4.3.4.2.1 1
La2;lineage4.9 1
lineage4.6.1.1 1
M.canetti;lineage4.9 2
lineage2.2.1;lineage6.3 1
lineage1.1.2 1
spoligotype Counts
spoligotype Count
None 188
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR10809074 HR-TB lineage4.9 None
ERR363502 Other lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR6458423 HR-TB lineage2.2.1 None
SRR9970978 Other La1;lineage4.1.2 None
SRR10808730 Other lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9786601 Other lineage4.1.2.1 None
ERR9787030 RR-TB lineage6.1.2 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
ERR349266 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR9786671 Other None
ERR9786843 Other None
SRR6789626 Other None
SRR28351339 MDR-TB lineage4 None
ERR369162 Other lineage4.9 None
ERR363449 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4815544 Sensitive lineage1.2.2.2 gb
ERR4818929 HR-TB lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR20969708 HR-TB lineage2.2 None
ERR4820773 HR-TB lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR369163 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR349265 Other lineage4.9 None
ERR373946 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR124636 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4819877 HR-TB lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR363453 Other lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR4797184 HR-TB lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR373947 Other lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR4819241 Other lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR11662690 HR-TB lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR363456 Sensitive lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9787197 Other None
SRR3675236 Other None
ERR349300 Other lineage4.9 None
ERR137286 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
SRR10808793 Sensitive lineage2.2.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR369158 Other lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1183049 RR-TB lineage2.2 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR1159378 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR702406 Other lineage2.1 None
ERR363506 Sensitive lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6046133 HR-TB lineage4.9 None
ERR6865502 Sensitive lineage4 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7496472 Other lineage4.9 None
ERR349264 Other lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR3797047 MDR-TB lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR11972367 Sensitive lineage2.2.1 None
ERR11465024 Other lineage4.1.1.3 None
ERR212125 HR-TB lineage4.9 None
ERR502510 HR-TB lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR3283018 HR-TB lineage4.9 None
ERR736834 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR1063896 HR-TB None
ERR9786604 Other None
SRR28351554 Other La1.6;lineage4 None
SRR28119805 Other lineage4.9 None
ERR6866807 RR-TB lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4797264 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR176651 Other lineage4.9 None
ERR373945 Other lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR363499 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR26399973 Other La3;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR5341310 Other lineage1.1.2 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176778 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR751326 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR6797317 Sensitive lineage1.2.2.2 None
ERR3797028 HR-TB M.canetti;lineage4.9 None