Rv1173 - c.1603T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
5 RR-TB
46 HR-TB
9 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
47 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 61 |
| 2 | |
| La1.8.1 | 2 |
| La1.7;lineage4.9 | 6 |
| lineage1.2.1.1 | 1 |
| La3;lineage4.9 | 9 |
| lineage2.2.1 | 7 |
| lineage4.9;lineage9 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage3 | 2 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 5 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.8 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La1.7 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 143 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29096410 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR161037 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR5341467 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR29097026 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736848 | Other | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4798099 | Other | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3273109 | HR-TB | lineage4 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None |
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