Rv0006 - c.1065G>C
Drug resistance types
43 Sensitive
7 RR-TB
99 HR-TB
8 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 31 |
| lineage1.1.1 | 2 |
| lineage2.2 | 5 |
| lineage1.2.1.2.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2.1 | 8 |
| 93 | |
| La1.8.1 | 3 |
| lineage4.1 | 1 |
| lineage1.1.2 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4 | 41 |
| lineage2.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.8 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.1.1 | 1 |
| lineage3 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.2.1 | 8 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.3.3 | 3 |
| lineage4.8.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.6.1.1 | 2 |
| La1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.3.2 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 229 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR8692887 | Other | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR6325445 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6045261 | Other | lineage1.1.2 | gb | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675383 | HR-TB | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675574 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341453 | Sensitive | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341456 | Other | None | SRR5341300 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1035138 | MDR-TB | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341467 | Other | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821053 | Other | lineage3 | None | ERR2693232 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046492 | Other | None | SRR6046299 | HR-TB | None | ERR4830353 | Other | None | SRR6325444 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR4831117 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR5311099 | HR-TB | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067712 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797044 | Other | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4024991 | Other | None | ERR4188350 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4811493 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR736837 | Other | lineage4.9 | None | ERR6358837 | HR-TB | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR8976043 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180996 | HR-TB | lineage4 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None |
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