Rv1221 - c.486C>T


Drug resistance types
1 Sensitive 12 RR-TB 71 HR-TB 18 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 82 Other
lineage Counts
lineage Count
lineage4.9 51
lineage4.8;lineage4.9 2
M.canetti;lineage4.9 3
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage4.1.2.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
11
lineage4.9;lineage6.3 5
La1.2.BCG 1
lineage3 2
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.8 2
lineage4.9;lineage7 3
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage4.9;lineage6.3 7
lineage2.1;lineage4.9 10
La1.6;La3;M.canetti;lineage4.2.2 1
M.canetti;lineage2.1;lineage4.9 2
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage2.1;lineage6.3 2
lineage4.1.2 1
La3;M.canetti;lineage4.9 1
La1.8.1 1
lineage2.2 2
M.canetti;lineage4.2;lineage4.9 1
lineage2.2.1 9
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.3.2.1 1
lineage4.1.1.1 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.3.3 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage2.1 5
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3 1
La1.7;lineage4.2 1
M.canetti;lineage2.2 2
lineage4.6.2.2 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage4.9 2
lineage6.3.1 1
lineage1.1.2 1
La3;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage2.2.1;lineage3 1
La1.7;M.canetti;lineage4.9 2
lineage3.1 1
La3;lineage4.3.4 1
lineage4.6.3;lineage4.9 1
lineage4 1
lineage4.1;lineage4.8 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.1 1
lineage4.1.3 2
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage4.2 1
lineage2.2.1.1 1
La1;lineage4.9 1
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage4.9;lineage7 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.6.4;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage6.1.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
spoligotype Counts
spoligotype Count
None 192
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786682 Other lineage4.1.2.1 None
SRR5341469 HR-TB lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR9786671 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9117709 Other None
ERR234659 HR-TB None
SRR25827682 Other None
ERR9787197 Other None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR4800341 HR-TB lineage3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR2514327 HR-TB lineage4.8 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
SRR20969708 HR-TB lineage2.2 None
ERR6866639 HR-TB lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797015 HR-TB lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR20969731 Other lineage2.2.1 None
ERR387051 RR-TB lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR26159043 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR176793 Other lineage4.1.1.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR5341453 Other lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11049020 Other lineage4.8 None
ERR4819781 Other lineage2.2.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4797184 HR-TB lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
SRR3416776 Other lineage2.1 None
SRR5341467 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR1172817 Other La3 None
SRR23961559 Other La1.7;lineage4.2 None
SRR17658565 Pre-XDR-TB lineage3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR9786645 Other lineage4.6.2.2 None
SRR20970016 Other lineage2.2 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
SRR28119777 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR1710057 Other lineage2.1 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR10321140 Sensitive lineage1.1.2 None
SRR26399973 Other La3;lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR1173778 Other lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR3283032 Other lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
ERR3273109 HR-TB lineage4 None
ERR2446566 Other lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675585 HR-TB lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR14066533 RR-TB lineage1.1.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR3797046 HR-TB lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4819809 HR-TB lineage4.6.2.2 None
ERR4815752 Other lineage4.9 None
ERR502510 HR-TB lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR9786617 Other lineage4.1.1.1 None
ERR502511 HR-TB lineage4.9 None
ERR9786843 Other None
ERR4407463 HR-TB None
ERR4769497 Other La1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3439432 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR6044942 HR-TB lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
SRR5341300 HR-TB lineage4.9 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR3283030 HR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR3804169 HR-TB lineage4.1.3 None
ERR124636 HR-TB lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4796254 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR9787153 Other lineage6.1.3 None
SRR1196546 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR5341425 Other lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None