Rv0006 - c.474C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
80 Sensitive
1 RR-TB
20 HR-TB
4 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.2 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9 | 50 |
| La3 | 38 |
| La1.8.1 | 3 |
| lineage2.2.1 | 8 |
| La1.7;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.4 | 2 |
| lineage4.6.1.1 | 2 |
| lineage3 | 1 |
| lineage4 | 1 |
| lineage4.3.3 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| 3 | |
| lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.1.1 | 1 |
| M.canetti;lineage2.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR29053033 | Sensitive | La3 | None | SRR28351414 | Sensitive | La3 | None | SRR28409674 | Sensitive | La3 | None | SRR28859928 | Sensitive | La3 | None | SRR27450477 | Sensitive | La3 | None | ERR13291178 | Sensitive | La3 | None | SRR6046210 | Other | lineage4.9 | None | ERR2512826 | Sensitive | La3 | None | SRR1791747 | Other | La1.8.1 | None | ERR4817427 | Sensitive | La3 | None | ERR6375133 | Sensitive | La3 | None | ERR6375134 | Sensitive | La3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR11069070 | Sensitive | lineage4.1.4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | SRR27450476 | Sensitive | La3 | None | SRR30182773 | Sensitive | La3 | None | ERR751326 | Other | lineage4.9 | None | ERR11465717 | Sensitive | lineage4.3.3 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR7240033 | Other | La1.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1750876 | Sensitive | lineage4.3.3 | zw | ERR4798322 | Sensitive | La3 | in | ERR323085 | Sensitive | lineage4.9 | None | ERR4797736 | Sensitive | La3 | in | ERR4799118 | Sensitive | La3 | in | SRR7070522 | Sensitive | La3 | None | ERR4799643 | Sensitive | La3 | in | SRR5341299 | HR-TB | lineage4.9 | None | ERR4800242 | Sensitive | La3 | in | SRR5341469 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR7070129 | Sensitive | La3 | None | ERR1063896 | Sensitive | None | ERR4796505 | Sensitive | La3 | in | ERR502511 | Sensitive | lineage4.9 | None | ERR13291776 | Sensitive | La3 | None | SRR29053222 | Sensitive | La3 | None | ERR11067178 | Sensitive | La3 | None | SRR27450483 | Sensitive | La3 | None | SRR16089392 | Sensitive | La3 | None | SRR28351652 | Sensitive | La3 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR25827453 | MDR-TB | None | ERR702405 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR29231281 | Sensitive | La3 | None | SRR5642713 | Sensitive | La3 | None | SRR5642718 | Sensitive | La3 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR3276253 | Sensitive | La3 | nl | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR4796515 | Sensitive | La3 | in | SRR5341467 | Other | lineage4.9 | None | ERR4800046 | Sensitive | La3 | in | ERR736834 | Sensitive | lineage4.9 | None | ERR13270279 | Sensitive | lineage4.1.4 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR4799735 | Sensitive | La3 | in | ERR4799479 | Sensitive | La3 | in | SRR3675585 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR4813391 | MDR-TB | lineage4.1.1 | pe | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4815064 | Sensitive | La3 | gb | ERR4816917 | Sensitive | La3 | gb | ERR4817463 | Sensitive | La3 | gb | ERR4817778 | Sensitive | La3 | gb | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR1750875 | Sensitive | lineage4.3.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None |
|---|
