Rv0005 - c.2007T>C


Drug resistance types
0 Sensitive 4 RR-TB 39 HR-TB 31 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 42 Other
lineage Counts
lineage Count
lineage2.2.1 3
lineage2.1;lineage4.9;lineage6.3 7
lineage4.9 22
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;lineage4.9 3
lineage2.2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9 7
lineage2.1;lineage4.9 10
lineage1;lineage4.9 1
La3;lineage4.3.4 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La1;lineage4.1.2 1
M.canetti;lineage4.2 1
lineage2.2.1.1 2
lineage4.3.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3;lineage2.1;lineage4.9;lineage6.3 3
5
lineage4 1
La1.7;M.canetti;lineage4.9 1
lineage4.3.4 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage4.9 3
lineage2.1;lineage6.3 1
lineage4.1.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.9 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1.3 2
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.1.2.1 1
lineage4.1.1.1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;lineage2.1;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1 1
lineage4.7;lineage4.8 1
M.canetti;lineage2.1;lineage6.3 1
La3;M.canetti;lineage3.1 1
lineage4.9;lineage6.3 1
lineage3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 118
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR13423649 Other lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4798099 HR-TB lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR736875 HR-TB lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR16088024 HR-TB lineage4.3.3 None
SRR6046594 Other lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR6789626 Other None
SRR28351339 MDR-TB lineage4 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3804169 HR-TB lineage4.1.3 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1063846 HR-TB lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR1035122 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1165699 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR9786611 HR-TB lineage4.1.3 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SRR3675236 Other None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR176651 Other lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR702406 Other lineage2.1 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR5341461 HR-TB lineage4.9 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR21798451 Pre-XDR-TB lineage4.7;lineage4.8 None
SRR5341453 Other lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR12416842 HR-TB lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR181824 MDR-TB lineage4.9 None
ERR9786843 Other None
SRR7535086 Other None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4800341 HR-TB lineage3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None